Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00313 ATGGGAGGCGGTGGCCGAAGCTCTGCTCCGAAACAGAGAAACTCCGGTGAAGATATGGTTTGGAAGAAGCGCGTTCCACACGAAAAACCACCGTTCAGTCTGAGCAAAGTGAAGAAAGCGATTCCACCGCACTGTTTCGAGCGTTCGGTGGTTCGTTCCTTCTCCTACGTCTTCTACGACCTGACCATAGCCTCGTGTCTTCTGTACGTGGCGCTAAACTACTTCTCAACCCTTCCTCATAACCTCTCCCTCTTGGCCTGGCCCCTATACTGGATCCTCCAAGGTTCCATCCTCACCGGCGTTTGGGTCATAGCGCACGAGTGTGGCCACCACGCTTTCAGCGATTACCAGTGGCTCGATGACACGGTTGGCCTCGTTCTACATTCGTTTCTTCTTGTGCCCTATTTTTCGTGGAAATATAGCCACCGCCGCCACCACTCCAACACGGGGTCCCTCGAACGTGACGAAGTGTTTGTGCCGAAAACAAAGTCCAGAGTTGGTTGGCATTCTAAGTACCTCAACAACCCTGCTGGGAGAGTTCTCACTCTTACCATCACCCTAACCCTAGGTTGGCCTCTCTACTTGGCCTTCAACGTTTCGGGTCGGAGCTACGAGCGTTTCGCCTGCCACTATGACCCTTACGGCCCCATTTACTCCGACCGCGAAAGGCTTCAGATTTACGTCTCCGATGTAGGGGTTCTGGCCGTGTGTTACGGCCTCTACAAGCTTGTGTTGGCAAAAGGGTTCCTTTGGGTGGTTTGTGTCTATGGGGTGCCTCTGATGGTGGTAAATGCGTTGTTGGTGTTGATCACTTTCTTGCAGCACACTCACCCTGCGGTTCCTCACTACGATTCCACGGAGTGGGATTGGCTGAGAGGCGCATTGGCCACCGTTGACAGAGATTACGGGATTCTGAACAAGGTTCTTCATAACATCACTGACACACACGTGGCACATCACTTGTTCTCCACCATGCCGCATTACCATGCAATGGAAGCCACCAATGCTATAAAACCGATTCTGGGAGATTATTATCACTTTGATGGAACTCCTATCTATAAGGCAATGTGGAGAGAGGCAAGAGAGTGCATGTACGTTGAGACTGATGAAAAGTCTAAGAACAGTGGTGTTTACTGGTACAACAATAAACTGGATTGA 1158 0.5104 MGGGGRSSAPKQRNSGEDMVWKKRVPHEKPPFSLSKVKKAIPPHCFERSVVRSFSYVFYDLTIASCLLYVALNYFSTLPHNLSLLAWPLYWILQGSILTGVWVIAHECGHHAFSDYQWLDDTVGLVLHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKTKSRVGWHSKYLNNPAGRVLTLTITLTLGWPLYLAFNVSGRSYERFACHYDPYGPIYSDRERLQIYVSDVGVLAVCYGLYKLVLAKGFLWVVCVYGVPLMVVNALLVLITFLQHTHPAVPHYDSTEWDWLRGALATVDRDYGILNKVLHNITDTHVAHHLFSTMPHYHAMEATNAIKPILGDYYHFDGTPIYKAMWREARECMYVETDEKSKNSGVYWYNNKLD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00313 385 CDD Delta12-FADS-like 48 330 - -
Vimu3g00313 385 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g00313 385 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 9 383 IPR012171 GO:0016491
Vimu3g00313 385 Pfam Fatty acid desaturase 86 346 IPR005804 GO:0006629
Vimu3g00313 385 Pfam Domain of unknown function (DUF3474) 26 64 IPR021863 GO:0016717
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00313 Vimu-Chr3 2960335 2961492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00313 1 384 Lipid Metabolism Gene Families AT3G12120 73.438 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00313 K10256 - gmx:100780912 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00313 3 2960335 2961492 Vimu3g00313 3 2960335 2961492 ECH
Vimu6g02944 6 25976523 25977674 Vimu3g00313 3 2960335 2961492 PCT