Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00303 ATGGGAGATGTTCAAAACGTTAAGTTCTGCCAGTGGTGTGGTGGTTCAACGAAGCCTGGAATACCTGAAGGAGAAGAAAGATTCAGAGCCATATGTACCAGCTGTGGGAAGATTGCATATCAGAATCCAAAAATGGTAGTCGGTTGCCTCATTGAACACGATAACAAGGTCCTCCTTTGCAAGAGGAATATTGAACCATCTTATGGCCTATGGACACTTCCTGCTGGTTATCTAGAAATGGGAGAGTCAGCTAGGGAAGGTGCCATCAGGGAAACGAGGGAAGAAGCCAATGCTGAGGTGGAAGTGATTTCCCCCTTTGCTCAATTAGACATTCCTTTAATTGGCCAGACTTATATAATCTTCTTAGCAAGGTTGAAGAACCCCCATTTTTCACCTGGTCCAGAATCATCAGATTGCCAGCTTTTCCCTCTCGAAGAAATACCTTTTAACTCTCTATCCTTTTCATCAATGGTGGTCACTTTAAGTTTGTATGTTGAAGATAAGAAGGCAGGAGGAAAGCCTAAGTTCCATTATGGTACTATTAACAAAAGGCCTGGTACCAGTGCTTCTGACATTCATGCCTATACATTGGATCATCATATGCAGTCATGA 612 0.4281 MGDVQNVKFCQWCGGSTKPGIPEGEERFRAICTSCGKIAYQNPKMVVGCLIEHDNKVLLCKRNIEPSYGLWTLPAGYLEMGESAREGAIRETREEANAEVEVISPFAQLDIPLIGQTYIIFLARLKNPHFSPGPESSDCQLFPLEEIPFNSLSFSSMVVTLSLYVEDKKAGGKPKFHYGTINKRPGTSASDIHAYTLDHHMQS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00303 203 PANTHER NUDIX HYDROLASE 23 9 197 - -
Vimu3g00303 203 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 42 194 - -
Vimu3g00303 203 SUPERFAMILY Nudix 8 169 IPR015797 -
Vimu3g00303 203 Gene3D - 6 41 - -
Vimu3g00303 203 Pfam Nudix N-terminal 8 41 IPR029401 -
Vimu3g00303 203 ProSiteProfiles Nudix hydrolase domain profile. 42 165 IPR000086 -
Vimu3g00303 203 ProSitePatterns Nudix box signature. 76 97 IPR020084 GO:0016787
Vimu3g00303 203 Pfam NUDIX domain 46 147 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00303 Vimu-Chr3 2882190 2884408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00303 K18453 - gmx:100777180 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00303 3 2882190 2884408 Vimu3g00303 3 2882190 2884408 ECH
Vimu6g02933 6 25929095 25931639 Vimu3g00303 3 2882190 2884408 PCT