Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00279 ATGGCGATTCCATTATTTACCACTTCTCTCCTCTTCTTCTTCTTTTTCTCGTCCGTCACCGTCGCTAAAACGCACCGTTTCGTGCAAAGCATTCCTCCTTCCTCCTTAGGCCTCCACCAGCCGCAGAAGCTCAGCCACCTCCACTTCTTCTTCCACGACGTTGTCGGCGGCCGCAACCAGACCGCGGTGCGGGTCGCGGCGGCACCCACCACAGACAAGTCCTCGACGTTGTTCGGCGCGGTGGTGATGATGGACGACCCGCTCACGGAGCTCCCGGATGCTGACTCCACGGTGGTCGGGAGGGCGCAGGGGATCTACGCGTCGGCGTCGACAACTGAACTGGGGTTTCTGATGGCCATGAACTTCGCATTCACGCAGGGGAAGTACAACGGGAGCAGCCTGGCCGTGTTGGGGAGGAACACGGTGGAATCAGCCGTGAGGGAGATGCCGGTGGTGGGCGGCAGCGGGCTGTTCCGGTTTGCCCGCGGGTATGCGCAGGCCAAGACACATTCTATGAGTATGTGGGAAGCTGTTGTGGAATATGACGTTTATGTTTTACATTATTGA 567 0.5855 MAIPLFTTSLLFFFFFSSVTVAKTHRFVQSIPPSSLGLHQPQKLSHLHFFFHDVVGGRNQTAVRVAAAPTTDKSSTLFGAVVMMDDPLTELPDADSTVVGRAQGIYASASTTELGFLMAMNFAFTQGKYNGSSLAVLGRNTVESAVREMPVVGGSGLFRFARGYAQAKTHSMSMWEAVVEYDVYVLHY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00279 188 PANTHER NUCLEOPORIN-RELATED 33 184 IPR004265 -
Vimu3g00279 188 Gene3D - 34 184 IPR044859 -
Vimu3g00279 188 Pfam Dirigent-like protein 45 185 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00279 Vimu-Chr3 2569973 2570539 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00279 - - gmx:100798988 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00279 3 2569973 2570539 Vimu3g00279 3 2569973 2570539 ECH
Vimu6g02902 6 25572645 25578584 Vimu3g00279 3 2569973 2570539 PCT