Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00248 ATGGCTTCGGAAGTAGTTCCATCTTCCAGGGATTTGTTGAAATGTTGCAATTGTGGGTGCGGTTGCTCGATGTTAGCTCAATCTTCGGGGGTTTGGATTCGATCTGTTAAACGAAAGCATGATGAGTTCAAAATGGATGGTCAACTGGCCATGCCGGCGTTTGCAAAGGTTGAAATTGAGAATGAATGTGTGGCCTTGCGTGAGATGGTCAGTATGCAGCAGAAAACCATTCAAGATTTGAATGCTGAGTTGGAGGAGGAGAGAAATTCTTCATCAACTGCGGCGAATGAGGCCATGTCAATGATATTGAGGCTGCAGAGGGAAAAGGCAGAGGTTCAAATGGAGGCGCGCCAATTCAAGCGTTTTTCGGAGGAGAAGATGCAACATGACCAGGAGGAACTTCTATCTTTGGAAGATTTATTGTATAAGAGGGAACAGATCATTCAGTCACTTACTTGTGAAGTTCAGGCTTACAAGCACAGGTTGATGAGTTTTGGTCTTACTGAGGAGGAGGCCGAGGGTGACCAATATGAACTTCCACCCTATGAATATCCTCCTTTGAAATGTAGTGTGATGCATGGTGCTACAGATGCTGATATCGATGACACGGATATAGAGAAATATGCTTTTGGTGAAACTCCAACTGACCAATTGAGGAGCTTGGAAAATAGGATTTCTCAAATGGAGAAAACTCCCACTTATACCCAGATGGATGGGGATTTTACAGTGAAAAATAGTCTAGAGAAAGTAATTGTTGGACAGTCTCCAAGAAGGAATAAGCATTCTAGGAAACTTTCCTCTGACTCAACATCAATTGGTGGGATGGTTAAAGAAACAGGACCCGAGTCTGCCATGGATTCTCCCAAGCGCAATAATAACAATAAGAGAGATTATTTCTCGAAGTCAGAGGAACCTTCCAAGGTAGATAATGTATCAGAAGGTGATGATACGAATGACAGAATTTATACAATTGACTCTGTTCATTGTGGCGCACCATGTAATGGTTTCACAGATTCTAAAGCTGAAACTATTGATTTCGAAGATTATGCAACCACTCCAATGGGGTCAGGGAATCATGGTACTGAATTTGAGGATCCCTACGTAAAGAAGCTTTACATGAGGCTGCAGGCACTTGAGGCTGATAGGGAATCAATGAGGCAGGCAATCATTTCAATGCGCACGGATAAAGCACAACTGGTGTTGCTGAAGGAAATAGCTCAACATCTGTGCAAAGAGATGTCACCGCAAAGAAAAATGGCAAAAAAACCTAGTTTTGCAGGCAACTCTGCATTATTTTCAATTGTTAAGGTAATTTAA 1317 0.4229 MASEVVPSSRDLLKCCNCGCGCSMLAQSSGVWIRSVKRKHDEFKMDGQLAMPAFAKVEIENECVALREMVSMQQKTIQDLNAELEEERNSSSTAANEAMSMILRLQREKAEVQMEARQFKRFSEEKMQHDQEELLSLEDLLYKREQIIQSLTCEVQAYKHRLMSFGLTEEEAEGDQYELPPYEYPPLKCSVMHGATDADIDDTDIEKYAFGETPTDQLRSLENRISQMEKTPTYTQMDGDFTVKNSLEKVIVGQSPRRNKHSRKLSSDSTSIGGMVKETGPESAMDSPKRNNNNKRDYFSKSEEPSKVDNVSEGDDTNDRIYTIDSVHCGAPCNGFTDSKAETIDFEDYATTPMGSGNHGTEFEDPYVKKLYMRLQALEADRESMRQAIISMRTDKAQLVLLKEIAQHLCKEMSPQRKMAKKPSFAGNSALFSIVKVI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00248 438 Coils Coil 368 395 - -
Vimu3g00248 438 Coils Coil 70 125 - -
Vimu3g00248 438 MobiDBLite consensus disorder prediction 251 317 - -
Vimu3g00248 438 MobiDBLite consensus disorder prediction 289 317 - -
Vimu3g00248 438 ProSiteProfiles GTD-binding domain profile. 61 159 IPR007656 -
Vimu3g00248 438 Pfam Zein-binding 65 155 IPR007656 -
Vimu3g00248 438 PANTHER BNAANNG28530D PROTEIN 58 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00248 Vimu-Chr3 2141229 2142545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00248 - - gmx:100814833 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00248 3 2141229 2142545 Vimu3g00248 3 2141229 2142545 ECH
Vimu6g02218 6 19453167 19454444 Vimu3g00248 3 2141229 2142545 PCT