Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02877 GTTTGTGTTGACACACAAATGGAACTGAAACTGCTCCTAACGCTTTTATTGATTTTGTCTGCAACTGTTGCGGCTGATTACATTCGACCTCCGCCTCGAAAAGCTTTGCATCTTCCATGGCATTCTCAACCCTCCTCTTACCCTCAACAGGTACACATTTCTTTAGCAGGAGACCAGCACATGAGAGTTACTTGGATAACTGATGATAATTCTGCACCTTCAATTGTAGAATATGGAACACTGCCAGAGCAATATGGCTCTGTAGCTGAAGGAGAGACCACCTCGTACAGTTATGCGTTCTATAACTCAGGAAAGATACACCATGCCGTTATTGGTCCTTTAGAACCTGATTCTGTGTACTATTATCGATGTGGTGGACAAGGTCCCGAGTTCCAGCTCAGAACTCCTCCAGCTCAACTTCCAATCACTTTTGCTGTGGCTGGGGATTTAGGTCAAACTGAATGGACTAAATCAACATTGGATCACATTGACCAATGTAAGTATAATGTTCACCTACTTCCAGGAGACCTTGCATATGCTGATTACATCCAGCATCGATGGGACTCCTTTGGTAGGCTAGTGCAGCCACTTGCTAGTGCAAGACCATGGATGGTAACACAAGGGAACCATGAAGTAGAGAGCATACCTTTGTTAAAGGATGGGTTTGTGTCCTATAATTCCAGGTGGAAAATGCCATTTAAGGAAAGCGGATCAAATTCAAATCTCTTTTATTCATTTGAAGTGGCAGGTGCTCACATTATCATGCTTGGGTCCTATGCAGATTATGATGAATACTCTGAGCAATATAGATGGCTTAAGGAAAATCTTTCAAAGGTGGACAGGAAAAGGACACCTTGGTTGCTGGTGTTATTTCATGTGCCGTGGTATAATAGCAACACTGCTCATCAAGGTGAAGGCGCTGATATGATGGCAGCTATGGAGCCATTACTTAATGCTGCTAGCGTGGATTTAGTTCTTGCTGGTCATGTGCATGCTTATGAACGCTCGAAACGTGTATACAATGGAAGAGTTGACCCTTGTGGTTCAGTCCATATAACCATTGGTGATGGAGGAAACAAAGAAGGCTTAGCTCATAGATATATAAATCCACAGCCAATATGGTCAGAATTCCGTGAAGCCAGTTTTGGTCACGGCGAGCTAAAGATTGTAAACTCTACCCATGCTTTCTGGAGTTGGCATAGGAATGATGATGATGAGCCGGTAAAATCAGACGATATCTGGATAACCTCTTTGATAAGCTCAGGATGTGTTGATCAGAAGAGAAATGAACTCAGGAATAAACTTATGACTCCTTAA 1317 0.4282 VCVDTQMELKLLLTLLLILSATVAADYIRPPPRKALHLPWHSQPSSYPQQVHISLAGDQHMRVTWITDDNSAPSIVEYGTLPEQYGSVAEGETTSYSYAFYNSGKIHHAVIGPLEPDSVYYYRCGGQGPEFQLRTPPAQLPITFAVAGDLGQTEWTKSTLDHIDQCKYNVHLLPGDLAYADYIQHRWDSFGRLVQPLASARPWMVTQGNHEVESIPLLKDGFVSYNSRWKMPFKESGSNSNLFYSFEVAGAHIIMLGSYADYDEYSEQYRWLKENLSKVDRKRTPWLLVLFHVPWYNSNTAHQGEGADMMAAMEPLLNAASVDLVLAGHVHAYERSKRVYNGRVDPCGSVHITIGDGGNKEGLAHRYINPQPIWSEFREASFGHGELKIVNSTHAFWSWHRNDDDEPVKSDDIWITSLISSGCVDQKRNELRNKLMTP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02877 438 Coils Coil 262 282 - -
Vimu2g02877 438 Pfam Iron/zinc purple acid phosphatase-like protein C 350 405 IPR025733 -
Vimu2g02877 438 SUPERFAMILY Metallo-dependent phosphatases 136 416 IPR029052 -
Vimu2g02877 438 CDD MPP_PAPs 141 417 IPR041792 -
Vimu2g02877 438 PANTHER ACID PHOSPHATASE RELATED 14 416 IPR039331 GO:0003993
Vimu2g02877 438 Pfam Purple acid Phosphatase, N-terminal domain 48 128 IPR015914 GO:0003993|GO:0046872
Vimu2g02877 438 SUPERFAMILY Purple acid phosphatase, N-terminal domain 34 137 IPR008963 GO:0003993|GO:0046872
Vimu2g02877 438 Gene3D - 47 138 - -
Vimu2g02877 438 Pfam Calcineurin-like phosphoesterase 143 333 IPR004843 GO:0016787
Vimu2g02877 438 Gene3D - 139 425 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02877 Vimu-Chr2 27151039 27155152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02877 48 428 Miscellaneous Gene Families AT1G13900 24.890 7.48e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02877 K22390 - gmx:100782338 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02877 2 27151039 27155152 Vimu2g02877 2 27151039 27155152 ECH
Vimu2g02877 2 27151039 27155152 Vimu1g00459 1 2793639 2795929 PCT