Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00459 ATGGGATGTTGGATTTTGCGATGGAGAATAGAAAGAAGGATTGAAGTGGTAGCAGACACTGATATGGAACAACCAAAACACAAACTTCTTCTGATTCTAACGCTTCTTTCTTCAACCGTCATGGTTGAATCTGAATACCTGCGCCCTCTTCCTCGTAAAACCTTAACCATCCCACGGTATTCAGTTTCCAAGGCTCATTCCTCTTATCCTCAACAGGTACACATTTCTTTGGCGGGAGAGAAACACATTAGAGTTACCTGGATAACCGATGATAAACATTCACCCTCGTATGTAGAATACGGAACATTACCTGGGAGATATGACTCAATTGCTGAAGGAGAGTTCACCTCTTATAACTATATGTTATATACCTCAGGAACGATACACCATGTTGTAATTGGACCTTTGGAAGACAATACTGTGTACTTTTACCGTTGTGGGGGAAAAGGTCCTGATTTCCAGCTTAAAACCCCTCCAAACCAATTTCCAATTGTTTTTGCTGTGGCTGGTGATCTTGGTCAGACTGGCTGGACTAAATCAACATTGGCTCACATTGACCAATCTCAATACGATGTCTACCTGCTTCCAGGAGACCTTTCATATGCTGATTGTATGCAGCATCTGTGGGACAGTTTTGGTGAACTAGTGGAGCCGCTTGCTAGTACAAGGCCATGGATGGTGACAGAGGGTAACCATGAAGAAGAGAACATACTCTTGTTAACGGACAAGTTTGTGTCCTATAATTCCAGATGGAAAATGCCATTTGAGGAAAGTGGATCAACTTCAAATCTCTATTATTCTTTTGAGGTTGCTGGTGTCCACGTTATCATGCTTGGCTCCTATGAAGATTACGATGTGTACTCTGAACAATATAGATGGCTAAAGGAAGATCTGTCAAAGGTTGATAGGGAAAGGACACCTTGGTTGCTTGTGTCGTTTCATATACCGTGGTATAATAGTAACAAGGCCCATCAAGGTGCAGGGGATGATATGATGGCAGCTATTGAGCCGTTGCTTTATGCCGCTAGTGTTGATTTAGTTATTGCTGGTCATGTTCACGCTTACGAACGTTCGAAACGTGTGTATAATGGAAGATTGGATTCATGTGGTGCCGTTCATATAACTATAGGTGATGGAGGAAACAGGGAAGGCTTAGCTCGGAACCTGAATTTTGTTTTTTCTTTCCTTGTTCCTAGACGTGTCCTTACAAGATTGTTTATTGACAGGTATATAAACCCTCAGCCAAAGTGGTCAGAATTCCGTGAAGCCAGTTTTGGTCACGGTGAGCTGAAGTTTGTAAACTCCACTCATGCCCTCTGGAGTTGGCACAGGAACGATGATGACAATTCAGTAAAAGTTGATGATATCTGGATAAACTCTTTGGTCAGCTCGGGATGCGTTGATCAGAAGACACATGAACTCAGAAGTACACTTATGATACCCTAA 1446 0.4239 MGCWILRWRIERRIEVVADTDMEQPKHKLLLILTLLSSTVMVESEYLRPLPRKTLTIPRYSVSKAHSSYPQQVHISLAGEKHIRVTWITDDKHSPSYVEYGTLPGRYDSIAEGEFTSYNYMLYTSGTIHHVVIGPLEDNTVYFYRCGGKGPDFQLKTPPNQFPIVFAVAGDLGQTGWTKSTLAHIDQSQYDVYLLPGDLSYADCMQHLWDSFGELVEPLASTRPWMVTEGNHEEENILLLTDKFVSYNSRWKMPFEESGSTSNLYYSFEVAGVHVIMLGSYEDYDVYSEQYRWLKEDLSKVDRERTPWLLVSFHIPWYNSNKAHQGAGDDMMAAIEPLLYAASVDLVIAGHVHAYERSKRVYNGRLDSCGAVHITIGDGGNREGLARNLNFVFSFLVPRRVLTRLFIDRYINPQPKWSEFREASFGHGELKFVNSTHALWSWHRNDDDNSVKVDDIWINSLVSSGCVDQKTHELRSTLMIP 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00459 481 SUPERFAMILY Purple acid phosphatase, N-terminal domain 61 159 IPR008963 GO:0003993|GO:0046872
Vimu1g00459 481 Pfam Purple acid Phosphatase, N-terminal domain 70 150 IPR015914 GO:0003993|GO:0046872
Vimu1g00459 481 SUPERFAMILY Metallo-dependent phosphatases 163 454 IPR029052 -
Vimu1g00459 481 PANTHER ACID PHOSPHATASE RELATED 33 459 IPR039331 GO:0003993
Vimu1g00459 481 Pfam Calcineurin-like phosphoesterase 166 355 IPR004843 GO:0016787
Vimu1g00459 481 Gene3D - 161 462 IPR029052 -
Vimu1g00459 481 Gene3D - 69 160 - -
Vimu1g00459 481 CDD MPP_PAPs 161 460 IPR041792 -
Vimu1g00459 481 Pfam Iron/zinc purple acid phosphatase-like protein C 371 451 IPR025733 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00459 Vimu-Chr1 2793639 2795929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00459 59 468 Miscellaneous Gene Families AT2G03450 26.205 1.15e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00459 K22390 - gmx:100787977 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00459 1 2793639 2795929 Vimu1g00459 1 2793639 2795929 ECH
Vimu2g02877 2 27151039 27155152 Vimu1g00459 1 2793639 2795929 PCT