Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02546 ATGGCATCGTTCTGCGCCGCAAGGACCTTCCACATTCCGCCGATTAACGGCGGCGTTTTTTGCCGGCGGGCATCGTGGGCCGCCGGAATTGGCGGAGCCACGGTGGCCGGTGTCTCACTATTGCGTTCGTGTTCTTCTAAGCGCACTCTGCCATTCGCGTGCAGGAGCATCTCTAATGATTCCCGAATAAAGGAAGCTGTTCAGACTGAAAAGGCCCCAGCGGCATTGGGGCCATATTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCGGGTGTTCTTGGCCTTGTTCCCGAGACTGGAAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATGTGAGTTCTATGCCAGTGATCTGATGTTGCCTTACCAGGACCACCATTCTAAACTTTTGCACATCAATTACTTCCCTTCACCTGCTCCAGCTCGATCAACCTATCAAGTTGCTGCCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATTGCAGCACTTTGA 543 0.4972 MASFCAARTFHIPPINGGVFCRRASWAAGIGGATVAGVSLLRSCSSKRTLPFACRSISNDSRIKEAVQTEKAPAALGPYSQAIKANNLLFVSGVLGLVPETGKFISDNVEDQTEQDFKKVNEIYAKCEFYASDLMLPYQDHHSKLLHINYFPSPAPARSTYQVAALPMDAKIEIECIAAL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02546 180 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 65 179 IPR006175 -
Vimu2g02546 180 Gene3D - 61 180 IPR035959 -
Vimu2g02546 180 Pfam Endoribonuclease L-PSP 70 179 IPR006175 -
Vimu2g02546 180 CDD YjgF_YER057c_UK114_family 79 178 - -
Vimu2g02546 180 SUPERFAMILY YjgF-like 64 180 IPR035959 -
Vimu2g02546 180 ProSitePatterns Uncharacterized protein family UPF0076 signature. 156 174 IPR019897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02546 Vimu-Chr2 21619707 21622157 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02546 K09022 - gmx:100792467 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02546 2 21619707 21622157 Vimu2g02546 2 21619707 21622157 ECH
Vimu2g02546 2 21619707 21622157 Vimu1g00454 1 2750600 2752169 PCT