Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00454 ATGGCATCGTGGTGCGGTGTTCGGAGCTTCCAGATTCCGGCGATGGAACGCGGCGCACTGCGCAATAGTGCTTCATTGGCTGCCGGAGTGGGGTGTCTGTCTGTGGCCGGCACCTCCTTCTGGCGTTCCTCTTTGTCACCATACCGCTCTTTGCCATTCACATGCTTGAGCATTTCTTCCGATGCTCGTGTTAAGGAAAGTGTTCAAACTGAAGGGGCACCGGCGGCTCTGGGGCCATATTCTCAAGCAATCAAATCCGACAACCTTCTTTTCGTGTCTGGTGTTCTTGGCCTTGTTCCCGAGACAGGGAAATTCGTGTCTGATGATGTTGAGGAGCAAACTGAACAGCTTCTAAAAAACATGGGGGAAATCCTTAAAGCTGGTGGTGCTAGCTACTCCTCGGTCGTTAAGACAACAATTATGTTGGCTGACTTGAAGGACTTTAAAAAGGTCAATGAGATATATGCTAAATGTGAGTTCTGTATAGTGAATTTTGTTGATAATGTTTCCTTGACGGTTTACATTCTTGTAGAAGACTTCCCTTCACCTTTCCCTGCTCGTTCTACTTATCAAGTAGCTGCCTTGCCATTGGATGCCAAGATTGAAATTGAGTGCATAGCAACACTATGA 630 0.473 MASWCGVRSFQIPAMERGALRNSASLAAGVGCLSVAGTSFWRSSLSPYRSLPFTCLSISSDARVKESVQTEGAPAALGPYSQAIKSDNLLFVSGVLGLVPETGKFVSDDVEEQTEQLLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKCEFCIVNFVDNVSLTVYILVEDFPSPFPARSTYQVAALPLDAKIEIECIATL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00454 209 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 67 208 IPR006175 -
Vimu1g00454 209 FunFam L-PSP family endoribonuclease 64 160 - -
Vimu1g00454 209 Pfam Endoribonuclease L-PSP 72 208 IPR006175 -
Vimu1g00454 209 ProSitePatterns Uncharacterized protein family UPF0076 signature. 185 203 IPR019897 -
Vimu1g00454 209 SUPERFAMILY YjgF-like 67 209 IPR035959 -
Vimu1g00454 209 Gene3D - 62 209 IPR035959 -
Vimu1g00454 209 CDD YjgF_YER057c_UK114_family 80 207 - -
Vimu1g00454 209 NCBIfam Rid family detoxifying hydrolase 66 208 IPR006056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00454 Vimu-Chr1 2750600 2752169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00454 K09022 - gmx:100527559 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02546 2 21619707 21622157 Vimu1g00454 1 2750600 2752169 PCT