Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02519 ATGGTTCAGATCGCGAGGAGGAAGAAGGGACGGCCGTCAAAGGCGGATCTGGCGCGCCGTTCCGGTGAGACTCCGGCAGCCGCGTCGCAGCCCGATCTCCGGCGAAGCCACCGGCGCCGGAGCGTGAGGTACAACATCATCGACTATGATGGCGACTACCTCGACGACGAGGAGGACGAGAGAAGACGCGAAAAAAAGAAGCTCAAGCTCATGGCGAAGCTGAACCAGGATGGCGAAGAAGAGCCTGAAGAAGGAAACGACATGACACCAAGCCGCACTGGAGCTGATGTAAAGGGCAGAAAAGTAGAATCGAAAGGGCTCCACTCTATTTCTGTTTCAGGAACTCCGGTTATTCTTCAATCAGGGATTCCGTTGCCTGATAAGAGGACTCTGGAATTGATCCTTGACAAGCTTCAGAAGAAGGACACTTACGGTGTGTTTGCGGAGCCTGTTGATCCGGAAGAGCTACCTGATTATCATGATGTGATCGACCATCCCATGGACTTTGCCACTGTGAGGCAGAAGTTGGCAGCTGGATCTTATACTACTTTAGAACAATTTGAGAGTGATATATTTTTAATTTGCTCAAACGCAATGCAATACAATGCAGCGGAGACTATATACCACAAACAGGCACGATCAATACAAGAACTTGGACGGAAGAAGTTTGAGAAGTTAAGGATTGGGTTTGAACGCTCTCAGATGGAGCAGAAATCAGAGCAAAAGGCAGGATCTAATTATTTTGTTAAGAAGCAACCAAAGAAGCCTCTAGTACGTACGTCACTGGAACCTGTTGGCTCTGATTTCTCTTCAGGAGCAACTCTTGCTACTATTACAGATTTACAGCCAACTTCCCATCCGATGCAAGGCGGTAGATGTGAGAGGCCTGGCAATGTTGATGGTATTTTGGAGGCGAATGCTTTCTGGATTGATGCAAATCAAGAGAAAGCTGAAGAAGTTGTATCAGGGAAAGGCCTTCACTCCAAGTGGGGAAGGAAGTCCGTTGTGCTTGATGAAAGTCGGCGTGCCTCTTATAACATGTCCAATCAACCAATTGGTCGTTCAGAATCAATTTTTATGACTTTTGACAGTGAAATGAAACAGCTGGTTGCTGTTGGACTTCATGCAGAGTATTCCTATGCTAGAAGTTTGGCTCGATTTAGTGCATCTCTTGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAGCAGGCTCTGCCACCTGGCTTTAAATATGGTCGTGGTTGGGTTGGAGAGTACGAACAGCTTCCGACCCCAATATTAATGGTTAATAATCAGGTCCAAAAAGGAACTAGTTTGGCCATGAAGTTGCATTCAACTATTGACTTACCAAAGGGTGACAAAAGTTGTAAGAATGTGGAACCCAGCATTGAGCATCCTGTAAGTAGGCAGATGCTAGACGGAAAACATCCTTTGATGCCTGATGGTGAAGGAAAACCTTTCTTTGGTTCTTCTGGAGAAAGGCTCTGTGCTCCTGCCAACATCCTAAATCAGGAGCAGAACAACCAATCCAGGAAAATGGGCAAACCTGAGAATAAGGGTTTGAAACAAGAAGAGTTGAATTCTTTATCCTCAAGTAAGCAGAATAATAATGGTCTGGTTGCAAAGTTTTCTAGTAACACTCCTGCAGCAGAGTCCAAGCCCGGAGAGATGGTGCCAAGGAACATGTTCAAGCAGCCAGATGTTAGTGGAGAGTTGCCTAATGGAAAAGCCACAGGTACAAGTTTGAACAGACAAGTGACTGGTCCATCACTTGAAACTACATCAAGCAATTCAAGCAGGGAAGGTCCTGTTGTCCATGGGAAGGAGCTGGGTGTTAGCGACCCTGTTCAGTTGAAGGGAATGTTTGCTGAAAGGGCTCAAAAGCAACACAATCTCAATCATTTCGCTGTTGATACTCCACCAGTGACACTATCGGGTCCATCCGGACAGAGAGATGACTTAGTCAATGCTTCAGCAGCTGCTGCCCGTGCATGGATGTCTGTTGGGGCGGGAGGGTTTAAACAAGGACCGGACAATTCTAGTTCACCCAAAAATCAGATATCTGCAGATTCTTTGTACAACTCAACAAGAGAGTTCCATCAGCATATTTCAAGAATTCGAGGGGATTTTCCCTCTGCTGGAATGCCTTTCCAACCATTTCAAGCACCTGTTCCTCAATCTAGTCACACAGGCACTGTTTCACAATTTCCCAACCGGCCTACGGTTTTCCCTCACTTAGCATCTGCTGACCAATCTAGATTTCAGATGCAGTCCCCTTGGCGAGGACTCAGTCCTCGTAGCCAGTCAAGGCAGAAACAGGAAACCTTTCCACCTGACTTGAATATTGGTTTTCAATCTCCAGGGTCACCTGCAAAACAATCTTCTGGTGTCCTTGTTGACTCACAGCAACCAGACCTGGCTTTGCAATTATGA 2439 0.4654 MVQIARRKKGRPSKADLARRSGETPAAASQPDLRRSHRRRSVRYNIIDYDGDYLDDEEDERRREKKKLKLMAKLNQDGEEEPEEGNDMTPSRTGADVKGRKVESKGLHSISVSGTPVILQSGIPLPDKRTLELILDKLQKKDTYGVFAEPVDPEELPDYHDVIDHPMDFATVRQKLAAGSYTTLEQFESDIFLICSNAMQYNAAETIYHKQARSIQELGRKKFEKLRIGFERSQMEQKSEQKAGSNYFVKKQPKKPLVRTSLEPVGSDFSSGATLATITDLQPTSHPMQGGRCERPGNVDGILEANAFWIDANQEKAEEVVSGKGLHSKWGRKSVVLDESRRASYNMSNQPIGRSESIFMTFDSEMKQLVAVGLHAEYSYARSLARFSASLGPIAWKIASHRIQQALPPGFKYGRGWVGEYEQLPTPILMVNNQVQKGTSLAMKLHSTIDLPKGDKSCKNVEPSIEHPVSRQMLDGKHPLMPDGEGKPFFGSSGERLCAPANILNQEQNNQSRKMGKPENKGLKQEELNSLSSSKQNNNGLVAKFSSNTPAAESKPGEMVPRNMFKQPDVSGELPNGKATGTSLNRQVTGPSLETTSSNSSREGPVVHGKELGVSDPVQLKGMFAERAQKQHNLNHFAVDTPPVTLSGPSGQRDDLVNASAAAARAWMSVGAGGFKQGPDNSSSPKNQISADSLYNSTREFHQHISRIRGDFPSAGMPFQPFQAPVPQSSHTGTVSQFPNRPTVFPHLASADQSRFQMQSPWRGLSPRSQSRQKQETFPPDLNIGFQSPGSPAKQSSGVLVDSQQPDLALQL 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02519 812 MobiDBLite consensus disorder prediction 723 743 - -
Vimu2g02519 812 Gene3D - 126 246 IPR036427 GO:0005515
Vimu2g02519 812 Pfam Bromodomain 133 213 IPR001487 GO:0005515
Vimu2g02519 812 MobiDBLite consensus disorder prediction 1 41 - -
Vimu2g02519 812 MobiDBLite consensus disorder prediction 505 611 - -
Vimu2g02519 812 MobiDBLite consensus disorder prediction 73 101 - -
Vimu2g02519 812 CDD Bromodomain 127 223 - -
Vimu2g02519 812 SMART bromo_6 120 228 IPR001487 GO:0005515
Vimu2g02519 812 MobiDBLite consensus disorder prediction 525 553 - -
Vimu2g02519 812 MobiDBLite consensus disorder prediction 710 812 - -
Vimu2g02519 812 ProSitePatterns Bromodomain signature. 145 201 IPR018359 -
Vimu2g02519 812 SUPERFAMILY Bromodomain 124 226 IPR036427 GO:0005515
Vimu2g02519 812 PRINTS Bromodomain signature 142 155 IPR001487 GO:0005515
Vimu2g02519 812 PRINTS Bromodomain signature 172 190 IPR001487 GO:0005515
Vimu2g02519 812 PRINTS Bromodomain signature 156 172 IPR001487 GO:0005515
Vimu2g02519 812 PRINTS Bromodomain signature 190 209 IPR001487 GO:0005515
Vimu2g02519 812 MobiDBLite consensus disorder prediction 750 812 - -
Vimu2g02519 812 ProSiteProfiles Bromodomain profile. 139 209 IPR001487 GO:0005515
Vimu2g02519 812 PANTHER BROMODOMAIN CONTAINING PROTEIN 5 811 - -
Vimu2g02519 812 Coils Coil 54 74 - -
Vimu2g02519 812 MobiDBLite consensus disorder prediction 576 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02519 Vimu-Chr2 21150859 21156829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02519 K22184 - gmx:100792844 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02519 2 21150859 21156829 Vimu2g02519 2 21150859 21156829 ECH
Vimu2g02519 2 21150859 21156829 Vimu1g00436 1 2655861 2660581 PCT