Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00436 ATGATGGGTCAGATCGTGCGGAGGAAGAAGAAAGGGCGTCCATCCAAGACAGATCTAGCACGCCGCTCCGGTCAATCTCCGGCAGCCTCCCAGCCAGACCTACGACGGAGCCGCCGTCGCCGGAATGTGCGCTACAACATCGACTACGACGACTACCTTGACGAAGAAGACGAGGACGAGGAAGAGGACGAGAGGAGGCGCGAGAAGAAGAAGCTAAAGCTGGTGGTGAAGCTCAACAACAACGAGGAAGAAGACGATGACGAGGACGACGACGCGCCGAGTCATGTAGGGACGCGTGGGGTGCACGCACAGGAGGAAAAGGGAGAAGAGGAGGAGGATGAGGGAGAGGAGGAAGAGGAAGAGGAGGAAGGGAATGAGGAGGCGGAGGAACTGGAAGAAGAGCCTGAGGCAAAGGGAAGAAAAGTGGATTCTAAAGGGCTCCACTCAGTTTCAGTGTTAGGAACTCCGTCGAAGCTTCCACCTGGGATTCCGTTGCCTGACAAGAGGACCCTGGAGTTGATCCTTGACAAGCTTCAGAAGAAGGACACATATGGTGTGTATGCTGAACCAGTTGATCCAGAAGAGCTTCCTGATTATCATGATGTGATTGAGCATCCAATGGACTTTGCCACAGTGAGGAAGAAATTGGCAAATGGATCCTATCCTACCTTGGAACAATTTGAGAGTGATGTATTTTTGATTTGCTCGAATGCAATGCAATACAATGCAGCGGAGACTATATACCACAAACAGGCAAGGTCGATACAAGAACTGGCTAGGAAAAAGTTTGAAAAGTTACGGTTTGACTTTGATCGCACTCAGAGTGAGCTGAAGTCTGAACAAAAAACTAGATCTAATTCCCTGGTTAAGAAGTCGGCAAAGAAGCCGCTGGGTCATACTTCACAGGAACCAATTGGCTCTGATTTTTCCTCAGGTGCAACTCTTGCTACTATTGGAGATGTATTGCCAACATCCCATCCAATGCAAGGTGTCGTTTGTGAAAGGCCTGGAAATATTGATGGTCTTGTGGAGGGGAATGCTTTCATTATTGATGCAAGTCAAGAGAAAGCAGAAGACTACATATCAGGGAGGGGTCTGCTTTCCAAGTTGGGAAGGAAACCATCTATGCAAGATATGGAACGTCGTGCAACTTATAATATGCCTAATCCACCAGTTACTAGATCGGATTCTGTATTTACGACATTTGAGGGTGAAGTGAAGCAGCTGGTTACTGTTGGACTTCAAGCTGAGCACTCCTATGCCAGGAGTTTGGCTCGTTTTGCTGCAACTCTAGGACCTACAGCTTGGAGAATCGCTTCCCAGAGGATTCAGCAGGCACTACCACCTGGCTGTAAATTTGGTCGTGGTTGGGTTGGAGAGTATGAACCACTTCCCACACCTGTATTAAAGCTTGATAATCTTGCCCAGCAGCAACCTATTTTGGGGACTAAGACGCAGTCTACTGCTGAGTTAATAAAGGCTGACAAAAATTGTAAGAATGTGGAATCCACCGTGGAACATCCTGTTAATGGACCAATCCATGAGGGAAAACAGCCTTCTGTGTGTTCTAGTAGTGGGCTTACATCGGATGGCAAATCATCTTTGTTTGGTTCTGCTAGATCAAGACCCAATGCTCATGACAATCTCTTTTATCCGCAGCCCAATGTCCAAACTAGGAACCTCAACAAGTCTGAGAACAAGGGTTTGAAACAAGTGGAGTTGAACTCTTTACCCTCCAGTGATCAGAATAATGCCAGTCTAGTTGCAAAGCTTACAAGTAATACTCCTGCAGCAGTGTCTAAGCCCAGAGAAATGATACCTAGTAACTTGACTATTTTACCGTCTATGCCTTTCAAGCAGCCAGATACCAACGGAGTTGTTGGTGGAGAGTTGCCCAATGGAAAAGTAAGGAATACTAGTTTAAACAGACGGATGCCTGGTGCATCATCCGAAAGTACGTCAAATCAAACAGGTAGATCAGCTCCCTTTGTTGCCCATGGACAGGAGCAGACTCTTAGTGACCCAGTTCAATTGATGAGGATGTTAGCCGAAAAGACACAAAAACAACAGACTTCTAGTTCATCCAATCATTCCCCTGCTGACACCCCACCAGTGACCCCATCAGTTCCATCGGGACGGAGAGAGGATTTGAGCAATGCTTCAGCAGCAGCTGCCCGTGCATGGATGTCTGTTGGTGCAGCAGGTTTTAAACAAGGACCTGATATTTCTAGTTCACCCAAAAATCAGATTTCCGCAGAATCATTGTACAACCCAGCGAGAGAGTTCCATCAGCCCTTTTCACGAATTAGGGGCGAGTTTTCTCCTGGTGGAACACCTTTCCAGTCTGAGAAGAACAATTTTCCATTTCAGGCACTTGTACCCCAATCTCAACCTATTCAGCTAGTTGGTGCTTCACAGTTTCCAAACAGACCTATGGTCTTCCCTCAAGTAGCCGCTTCTGACTTGTCAAGATTTCAGATACCACCATGGCGGGGTATCCGACCTCACAGTCAACCAAGACAGAAACAGGAAACACTTCCTCCTGACCTGAACATTGGTTTCCAACCTCCTGGTTCACCTGCAAAACAATCATCTGGTGTGCTGGTTGACTCTCAGCAACCAGACCTTGCTTTGCAACTGTGA 2643 0.4733 MMGQIVRRKKKGRPSKTDLARRSGQSPAASQPDLRRSRRRRNVRYNIDYDDYLDEEDEDEEEDERRREKKKLKLVVKLNNNEEEDDDEDDDAPSHVGTRGVHAQEEKGEEEEDEGEEEEEEEEGNEEAEELEEEPEAKGRKVDSKGLHSVSVLGTPSKLPPGIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLANGSYPTLEQFESDVFLICSNAMQYNAAETIYHKQARSIQELARKKFEKLRFDFDRTQSELKSEQKTRSNSLVKKSAKKPLGHTSQEPIGSDFSSGATLATIGDVLPTSHPMQGVVCERPGNIDGLVEGNAFIIDASQEKAEDYISGRGLLSKLGRKPSMQDMERRATYNMPNPPVTRSDSVFTTFEGEVKQLVTVGLQAEHSYARSLARFAATLGPTAWRIASQRIQQALPPGCKFGRGWVGEYEPLPTPVLKLDNLAQQQPILGTKTQSTAELIKADKNCKNVESTVEHPVNGPIHEGKQPSVCSSSGLTSDGKSSLFGSARSRPNAHDNLFYPQPNVQTRNLNKSENKGLKQVELNSLPSSDQNNASLVAKLTSNTPAAVSKPREMIPSNLTILPSMPFKQPDTNGVVGGELPNGKVRNTSLNRRMPGASSESTSNQTGRSAPFVAHGQEQTLSDPVQLMRMLAEKTQKQQTSSSSNHSPADTPPVTPSVPSGRREDLSNASAAAARAWMSVGAAGFKQGPDISSSPKNQISAESLYNPAREFHQPFSRIRGEFSPGGTPFQSEKNNFPFQALVPQSQPIQLVGASQFPNRPMVFPQVAASDLSRFQIPPWRGIRPHSQPRQKQETLPPDLNIGFQPPGSPAKQSSGVLVDSQQPDLALQL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00436 880 ProSitePatterns Bromodomain signature. 185 241 IPR018359 -
Vimu1g00436 880 PRINTS Bromodomain signature 196 212 IPR001487 GO:0005515
Vimu1g00436 880 PRINTS Bromodomain signature 212 230 IPR001487 GO:0005515
Vimu1g00436 880 PRINTS Bromodomain signature 230 249 IPR001487 GO:0005515
Vimu1g00436 880 MobiDBLite consensus disorder prediction 517 541 - -
Vimu1g00436 880 Coils Coil 53 73 - -
Vimu1g00436 880 ProSiteProfiles Bromodomain profile. 179 249 IPR001487 GO:0005515
Vimu1g00436 880 MobiDBLite consensus disorder prediction 63 80 - -
Vimu1g00436 880 CDD Bromodomain 167 263 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 635 669 - -
Vimu1g00436 880 Pfam Bromodomain 173 253 IPR001487 GO:0005515
Vimu1g00436 880 MobiDBLite consensus disorder prediction 274 309 - -
Vimu1g00436 880 Gene3D - 101 288 IPR036427 GO:0005515
Vimu1g00436 880 SMART bromo_6 160 268 IPR001487 GO:0005515
Vimu1g00436 880 MobiDBLite consensus disorder prediction 857 880 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 1 145 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 625 669 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 684 702 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 508 552 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 828 880 - -
Vimu1g00436 880 Coils Coil 101 134 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 684 721 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 107 133 - -
Vimu1g00436 880 SUPERFAMILY Bromodomain 156 266 IPR036427 GO:0005515
Vimu1g00436 880 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 879 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 1 16 - -
Vimu1g00436 880 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00436 Vimu-Chr1 2655861 2660581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00436 K22184 - gmx:100799986 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00436 1 2655861 2660581 Vimu1g00436 1 2655861 2660581 ECH
Vimu2g02519 2 21150859 21156829 Vimu1g00436 1 2655861 2660581 PCT