Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02513 ATGGAGCCTCACGAGACTTCCTTTGTGTCCAAGGCGCGCATCGCGATCCATTCCGCTGCTGCGAAGGCGGAACGTGTTCTGTTGGACTTCAAAACCGATCGAGATTCAGATAAGCAGTTTCACGACGAGTTAGGGAGGCCGCAGGGCGATGAATCTGCTCGGAGCGAGCACGAGTCCAAGTTTCTCAATGAACTGAAGCATATAAAGTGGAGACCTCCGCATATAGGAACAAAGCAGGATTGGCAAGATAGAATAAACAACATTCGAAAAGGGAGAAAAGAAGTTGAAGTAACAGATAAAGTTGGTGACATAAACATGGCCTCCGCTCCATTTTATGAACATTCGTACATTCTGAATGAGCAGAATGATCTTGATGCCAAGGTTGAAGGCTTAGCTGCTGCGACTGAACACCCCATCCCTCCATCGTGTGTCCTGAAGCAGTTGGCTATAGCTTTTGAGGCTGGAAAGAGAACAAACTCAATGAAAGATTTTGTAGCTTCATCAAGAGGTTCATCACCTGCCAGAGAGAGGGCAGGCTTAAGTCTCTCTTCAATGAAGGCTTTAGTGTTGCGTGAAAAGGAGGCCAAACTTACCTCTGATTTCAGTAGCGATGAAAAAGTTCTGTATTTGATTAATTCATTGTTTGATCCAGAGGGAAGGTTCCTTAGAAGGAAGATCAACTCTGATCCAGAGGAAACTTCCATATCATCTTTGTCAAGAGATATTCATGGTGCTCCTCCTGAAAGCTTAGTTGCTAAGCTAGCTGAAGTAATTGGAAACTTCAAGACGCTCCAAGAAATGGCTCTTTTTTGGTGCAGGGTTGTTGCTGTACTGAGAAAACATTGGTCCAAAGGGAAATATTTACCTGGAGTCCCGCAAGATGACATTCCAGATTTGAAATATTGTCTTCTGTATCAAAAATTTCAAGTAATTAATTGTTGCATTTCTCGGAAAAGGCGCAACATTATTGCTACTGAATCACTAAATTCTATGATGGTGGAAGCCAATTTAAATACATTAGAACCAGCAAAGTACACGTACAATATTCCTGCAATTCCTTTATTACATGCAAAGTTAAGGACTGGAGAACTTGTTCTTCGACTTGGGGCTGATTGCCCGTCTGGAGATCTGATGTTACTTGAAACAGGCGAGCCTGCATTCTCTCCTGTGACCCAGGAGGGACCCTTGCTTACAGAAGATTTGATCAAAGAGACAGAGGAGTTTGTGCTCCGGACAGGAAGTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGACATGCAGGCATTCAAGGCTGCAAATCCTGGTTGTATTTTGGAAGATTTTGTGAGATGGTACTCTCCCCCTGACTGGACTGAAAGTGAGGGAACTGAGGATAGAGACTCTTCTTATTGCGATGAGTCAATGTCTACCAGAGGTCAACTAAGTCTACGTATGCAAAAGGAAGGTAATTTGTGGCGTGAATTATGGGAAACGTCTAAACCAGTTCCAGCTGTTAAACAGGCACCTCTCTATGATGAGGATTTGGCAGTGGAGGGTATTCTAGATGCATTTGAGGACATCCCGCCTTCGGAGCTTTTTGAACAACTGTTTGTTTCTCTTCTCGGTTCAGGATTTTCAATTGCTGAAAATATGCTATCTGGTGATGTTTATATTTCAAAATCGTTAAATGACTGCAAGGACTACATAGTTACCGCTTGTCAAAGCAACAGATTCAATGAGAAACTCGATGAGCTTATTCAGATGTATGAAATGGTGGAGAAAATGATGGTGAATCCAGATGAGGCACTGAAGGTAGTAAAGGTCATGGAAGAATTAGGTATGAGTGGCAGTGTACCAAAACGCCGGATATCTACTGGTGAACCAAAGCACCGGTTAAAGCAACTTAGCCATATGTTTGGTGGCAAAGATAAACCACTGAGCAAGTCTCTATGGAAAGAAGAGGTAAACGATGAAAAAAAGCTGGTTCGACATTCTTTCTCAAGTTTCTTTGACAACAGCAAGTCATCTTTATTTTCAAAAAAACCTCCTAAGCCTGCAAATCTATACCCTGTCGAACAACCTCTCTCTCTGGAAACTTTGCTTGATGTGTTGGGCTTGTACAAGGATGATCAGTCAAAATAA 2121 0.4276 MEPHETSFVSKARIAIHSAAAKAERVLLDFKTDRDSDKQFHDELGRPQGDESARSEHESKFLNELKHIKWRPPHIGTKQDWQDRINNIRKGRKEVEVTDKVGDINMASAPFYEHSYILNEQNDLDAKVEGLAAATEHPIPPSCVLKQLAIAFEAGKRTNSMKDFVASSRGSSPARERAGLSLSSMKALVLREKEAKLTSDFSSDEKVLYLINSLFDPEGRFLRRKINSDPEETSISSLSRDIHGAPPESLVAKLAEVIGNFKTLQEMALFWCRVVAVLRKHWSKGKYLPGVPQDDIPDLKYCLLYQKFQVINCCISRKRRNIIATESLNSMMVEANLNTLEPAKYTYNIPAIPLLHAKLRTGELVLRLGADCPSGDLMLLETGEPAFSPVTQEGPLLTEDLIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWYSPPDWTESEGTEDRDSSYCDESMSTRGQLSLRMQKEGNLWRELWETSKPVPAVKQAPLYDEDLAVEGILDAFEDIPPSELFEQLFVSLLGSGFSIAENMLSGDVYISKSLNDCKDYIVTACQSNRFNEKLDELIQMYEMVEKMMVNPDEALKVVKVMEELGMSGSVPKRRISTGEPKHRLKQLSHMFGGKDKPLSKSLWKEEVNDEKKLVRHSFSSFFDNSKSSLFSKKPPKPANLYPVEQPLSLETLLDVLGLYKDDQSK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02513 706 Pfam Rab3 GTPase-activating protein catalytic subunit 367 518 IPR026147 -
Vimu2g02513 706 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 131 679 IPR045700 GO:0005096|GO:0043547
Vimu2g02513 706 MobiDBLite consensus disorder prediction 36 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02513 Vimu-Chr2 21092397 21099658 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02513 K18270 - gmx:100800515 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02513 2 21092397 21099658 Vimu2g02513 2 21092397 21099658 ECH
Vimu2g02513 2 21092397 21099658 Vimu1g00431 1 2608077 2616361 PCT