Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00431 ATGGAGGAGCACACTTTCGTCTCCAAAGCGAGGATCGCCTTTCATTCTGCGGCGGCGAAAGCGGAGCGCGTGCTTATGGATTTCAAATCCGATCGAGCATTGACTCAATTTGTTGACCGTGAAGAAGATCACGATAGGCACTCGTCGCAGGAGGCGGATTCTCCCAACAACAACATCGAAAACGAGTCCAAGGAGGTTCGCAGTGAATTGAAGCATAAAAAGTGGAGGCCTCCACATATAGGAATAAAGCAGGATTGGCAAGATAGGATAAAGAACATCGGGAGAGGGAGAAAAGAAGTTGAAGATACTGATAAAGTTGGGGATGCGAACATGGCAGTTCCATTTTATGATGATAATTTGTACACCCTGAATGTGAAGAATGAACAAGATGCTAAGGCATCAGAATTATTTCCTTCAGTTGAAAGCCTAACTGCTGCAACTAAAGATCCCCTTCCTCCGTCATCTGTACTTAAGCAATTGGCTGTAGCTGTTGAGGCTGGAAGTAAAGTGAAGTCAATGAAAGAATTTATAGCTTCATCAGGAGGTTCTTCACCTGCTAAAGAGAGGGCAGGGTTGAGTCTCTCTGCTGTTAAGGCGTTAGTGCTACGGGAAAAGGAGGATGGTCAGACTTCGGAGTTTACTAGCAATGAGAAAGTTGTGCAGTTAATCAGTTCTTTGTTTGATCCAGAGGGAGATTTCCTTACAAGAAAGATCAACTCTAATACAGAGGAAACTGCCATGACATCGTTGCCAAGAGATATTCATGGTGCTCCTCCTGAAAGTCTTGTTGTTAAGCTAGCTGAAATCCTTGGAAACTACAGGACTGTCCGTAAAATGGCTCTTTTCTGGTGCTGTGTTGTTGCAGAAGTAAGAAAACTTTGGTCTGAGGAGCAACACTTACCAGGAGTCCCCAAGAACGAGATTCCTGATTTGAATTCATGTCTTCTATATCAACATTTTCAATTAATTAATTGCTGCATTTCTCGGAAAAGGTTCCGTGTTGTTGCCACTGAATCTCTAGATTCTATGGTGATGCAAGCTAGCTCAGACGCAAAAGAATCATCTAATTATAATGCTGGAGCTCCTGCAAGCCCTGTTCTATATGCTAGATTAAACAGTGGGGAGCTTGTTCTACGACTTGGTGCAAATCATCCTGCTGGAGATATGACATTGTTGGAAACTGGCGAGCCTGTGTATTCTCCGGTCACCCAGGACGGGCCTTTGCTTACTGAAGATCTAATCAGGGAAACAGAGGAGTTTGTGCTGCGGACTGGGAGTGTTGGAGCTGGGTGCTCTCAATTGCTCTCAGATATGCAAGCTTTCAAGGCTGCAAATCCTGGATGTATTTTAGAGGATTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGACAATGAGGCAAGTGTAGAGGATAGTGATGTTTTTGATAGTGGTGAATCGTTGTCTGCCAAAGGTCAGCTAAGTCGGCGAATGCAAAAAGAAGGTAATTTGTGGCGTGAATTGTGGGAAACATCAAAACCAGTACCAGCTGTTAAGCAGGCACCTCTGTTTGATGAGGATTTGGCAGTGGAGGGCATCCTCCATACTTTTGAGGACATCCATCCTTCTGATCTTTTTGTACAGCTGTTTGTTTCTTTGCTTGGTTTAGGATTTGCAATTGCTGAACCTATGCTGTCTAGCAATAGTGACTTCTCGAAGTTATTCTATGACTGCAAGGAGTACATAATTGCCGCTTGTCAAAGTAACAAACTGCACGAGAAAGTTGATGATCTTGTCCAGGCGTATGAAACAGTGGAGAGAATGTTATTAAATCCTGAAGAAGCACTAAAGATGATTAAGCAGACAGACGAATCAACTATGGTTACTGATGAACCAAAGAGCCCGTTGAAGAGGCTTAGACTTATCTTTGCCGGCAAAGATAAACTATTGAGGAAGTCTCTCTCAAAAGATCAGTTAAATGATGATGAAAAACCTGGTCGGCAATCATTCTCAAGTTTCTTTGATAGCAAGTCATCTTTGTTTTCAAAGAAGCCTCCAAAGTCTGGATCCCCATCTCCTGCTGAGAAATCTTCTCTAGATGTTAGTTGGACGGTTGCATAG 2100 0.4329 MEEHTFVSKARIAFHSAAAKAERVLMDFKSDRALTQFVDREEDHDRHSSQEADSPNNNIENESKEVRSELKHKKWRPPHIGIKQDWQDRIKNIGRGRKEVEDTDKVGDANMAVPFYDDNLYTLNVKNEQDAKASELFPSVESLTAATKDPLPPSSVLKQLAVAVEAGSKVKSMKEFIASSGGSSPAKERAGLSLSAVKALVLREKEDGQTSEFTSNEKVVQLISSLFDPEGDFLTRKINSNTEETAMTSLPRDIHGAPPESLVVKLAEILGNYRTVRKMALFWCCVVAEVRKLWSEEQHLPGVPKNEIPDLNSCLLYQHFQLINCCISRKRFRVVATESLDSMVMQASSDAKESSNYNAGAPASPVLYARLNSGELVLRLGANHPAGDMTLLETGEPVYSPVTQDGPLLTEDLIRETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDNEASVEDSDVFDSGESLSAKGQLSRRMQKEGNLWRELWETSKPVPAVKQAPLFDEDLAVEGILHTFEDIHPSDLFVQLFVSLLGLGFAIAEPMLSSNSDFSKLFYDCKEYIIAACQSNKLHEKVDDLVQAYETVERMLLNPEEALKMIKQTDESTMVTDEPKSPLKRLRLIFAGKDKLLRKSLSKDQLNDDEKPGRQSFSSFFDSKSSLFSKKPPKSGSPSPAEKSSLDVSWTVA 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00431 699 MobiDBLite consensus disorder prediction 649 699 - -
Vimu1g00431 699 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 51 690 IPR045700 GO:0005096|GO:0043547
Vimu1g00431 699 MobiDBLite consensus disorder prediction 58 72 - -
Vimu1g00431 699 MobiDBLite consensus disorder prediction 658 699 - -
Vimu1g00431 699 MobiDBLite consensus disorder prediction 40 73 - -
Vimu1g00431 699 Pfam Rab3 GTPase-activating protein catalytic subunit 379 531 IPR026147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00431 Vimu-Chr1 2608077 2616361 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00431 K18270 - gmx:100818643 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00431 1 2608077 2616361 Vimu1g00431 1 2608077 2616361 ECH
Vimu2g02513 2 21092397 21099658 Vimu1g00431 1 2608077 2616361 PCT