Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02477 ATGGCAGACAATCTTGTTGTTTCCAACATGGAACTTGAGAGATTGCTTAGCATGAAAGGAGGCAAAGGTGAAGGAAGCTATGCCAACAATTCCCAAGCTCAGGCCATCCATGCCAAGTCCATGCATCACCTTCTGAAAGAAGCCCTAGATGGAGTTCAACTTCAAAAGCCTAATATCCCTTTTGTGGTTGTGGATTTGGGGTGTTCATGTGGCAGCAACACCATCAATGTGGTGGATGTGATCATCAAGCACATCATCAAACGCTATGAAACCTTAGGATTAGAACCTCCTGAGTTTTCTGCTTTCTTCTCAGACCTTCCTGGCAATGACTTCAACACCCTCTTCCAGCTCCTTCCTCCCTTGGCCAACTATGGAGTTAGCATGGAAGAGTGCCTTTCCGCCAGCAACCACCGTGCCTACTTCGCCGCCGGCGTCCCTGGCTCCTTCTACAGGAGACTTTTTCCGGCAAGGTTCATTGACGTTTTCCACTCAGCCTTTTCCTTGCATTGGTTATCTCAGGTACCAGAATCTGTGATGGACAAGAGGTCAAGTGCATACAACAAGGGGAGGGTGTTCATCCATGGTGCTAGTGAGATCACAGCAAATGCTTACAGAAAACAATTTCGATCAGACTTGGCTGGGTTCTTGAGTTCAAGGTCTGTGGAATTGAAGAGAGGGGGCTCCATGTTCTTGGTTTGCTTAGGCAGAACTTCTGTGGACCCCACAGACCAAGGTGGGGCTGGCCTCCTATTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGCAGTGAGAAAAGAGACAGCTTCAACATTCCAGTTTATGCACCAAGCCTGCAAGATGTGAAGGAGGTGGTTGAATCTGATGGTTCATTTGCCATAAACAAGCTTGAGGTGTTCAAAGGAGGAAGCCCTCTTGTGGTGAACCAGCCAGGTGATGCTAGAGAAGTAGGAAAGGCCCTTGCCAACACTTGCAGGAGTGTGTCTGGTGTCCTTGTTGAAGCTCACATTGGTGACAAGCTTAGTGAGGAACTGTTTCTGAGAGTGGAACGTAGAGCAGCAAGCCATGGCAAGGAGTTATTGGAGCAGCTACAGTTCTTTCACATAGTTGCATCCCTTTCTTTTGCTCAATGA 1152 0.4783 MADNLVVSNMELERLLSMKGGKGEGSYANNSQAQAIHAKSMHHLLKEALDGVQLQKPNIPFVVVDLGCSCGSNTINVVDVIIKHIIKRYETLGLEPPEFSAFFSDLPGNDFNTLFQLLPPLANYGVSMEECLSASNHRAYFAAGVPGSFYRRLFPARFIDVFHSAFSLHWLSQVPESVMDKRSSAYNKGRVFIHGASEITANAYRKQFRSDLAGFLSSRSVELKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISSEKRDSFNIPVYAPSLQDVKEVVESDGSFAINKLEVFKGGSPLVVNQPGDAREVGKALANTCRSVSGVLVEAHIGDKLSEELFLRVERRAASHGKELLEQLQFFHIVASLSFAQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02477 383 Gene3D - 16 362 IPR042086 -
Vimu2g02477 383 Gene3D Vaccinia Virus protein VP39 30 309 IPR029063 -
Vimu2g02477 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 10 380 IPR029063 -
Vimu2g02477 383 Pfam SAM dependent carboxyl methyltransferase 59 379 IPR005299 GO:0008168
Vimu2g02477 383 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 17 361 IPR005299 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02477 Vimu-Chr2 20508648 20512211 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02477 K18848 - gmx:100801476 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02477 2 20508648 20512211 Vimu2g02477 2 20508648 20512211 ECH
Vimu2g02477 2 20508648 20512211 Vimu1g00378 1 2243457 2247363 PCT