Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00378 ATGGCTCCCATGGGAGACAATGTTGTTGTGTCCAACATGGAACTTGAAAGGTTGCTCAGCATGAAAGGAGGCAAAGGAGAAGCCAGCTATGCCAACAATTCCCAAGCTCAGGCCATACATGCGAGGTCGATGCTTCATCTTCTGAGAGAGACTTTGGACAGAGTTGAGCTGGCTGAGGGACGAGAGGTGCCGTTTGTGGTGGTGGACTTGGGCTGTTCGTGTGGGAGCAACACCATAAACGTGGTGGATGTGATCATAAAGCACGTTATGAAACGGTACGAGGCGTTGGGGTGGCAGCCACCGGAGTTTTCAGCTTTCTTCTCAGACCTTCCCAGCAATGACTTCAACACACTCTTTCAGCTGCTACCTCCTGTCGCCAACTATGGCGTCAGCATGGAAGAATGTCTTGCCGCTGACAACCACCGCTCCTACTTCGCCGCCGGAGTCCCCGGTTCTTTCTACCGGAGGCTTTTTCCGGCGAGGTCTGTGGATGTTTTCCACTCAGCTTTCTCTTTGCACTGGCTTTCTCAGGTGCCAGAAAGTGTTGTGGACAAAAGGTCAAGTGCATACAACAAAGGAAGAGTGTTTATCCATGGTGCTGATGAGAGCACAGCAAATGCTTACAAGAAACAATTCCAAACAGATTTGGCAGGGTTTCTGATGGCAAGGTCAGTGGAGATGAAGAGAGAGGGGTCCATGTTCTTAGTTTGCTTGGCCAGAACTTCAGTGGACCCTACAGACCAAGGTGGGGCAGGCCTTCTTTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGGTTGATTAGTCAAGAAAAACGAGACAGTTTTAACATTCCAGTTTATGCAGCAAGCCTGCAAGACTTCAAGGAGGTGGTTGAAGCGAATGGTTCATTCACCATAGACAAGCTTGAGGTATTCAAAGGAGGAAGTCCACTTGTGGTGAATCAACCAGATGATGCAAGTGAAGTAGGAAGAGCTCTAGCCAACAGCTGCAGGACCGTGTCAGGAGTTCTTGTTGATGCCCACATTGGTGACAAACTAAGTGAGGAACTTTTTCTTAGAGTGGAGCGTAGAGCCACTAGCCATGCCAAAGAGCTATTGGAGCAACTACAGTTCTTTCACATAGTTGCATCCCTTTCCTTTAGAGACTGA 1164 0.4905 MAPMGDNVVVSNMELERLLSMKGGKGEASYANNSQAQAIHARSMLHLLRETLDRVELAEGREVPFVVVDLGCSCGSNTINVVDVIIKHVMKRYEALGWQPPEFSAFFSDLPSNDFNTLFQLLPPVANYGVSMEECLAADNHRSYFAAGVPGSFYRRLFPARSVDVFHSAFSLHWLSQVPESVVDKRSSAYNKGRVFIHGADESTANAYKKQFQTDLAGFLMARSVEMKREGSMFLVCLARTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISQEKRDSFNIPVYAASLQDFKEVVEANGSFTIDKLEVFKGGSPLVVNQPDDASEVGRALANSCRTVSGVLVDAHIGDKLSEELFLRVERRATSHAKELLEQLQFFHIVASLSFRD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00378 387 Pfam SAM dependent carboxyl methyltransferase 58 383 IPR005299 GO:0008168
Vimu1g00378 387 Gene3D Vaccinia Virus protein VP39 33 313 IPR029063 -
Vimu1g00378 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 384 IPR029063 -
Vimu1g00378 387 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 20 367 IPR005299 GO:0008168
Vimu1g00378 387 Gene3D - 19 368 IPR042086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00378 Vimu-Chr1 2243457 2247363 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00378 K18848 - gmx:100807953 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00378 1 2243457 2247363 Vimu1g00378 1 2243457 2247363 ECH
Vimu2g02477 2 20508648 20512211 Vimu1g00378 1 2243457 2247363 PCT