Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02476 ATGGCACCCTCTATTATTTTGTCTGTGTTGTGCCTTCTGTTGGTTTTGACATGTGGTTATGTGCAACCCCTTGAAGAGGGTTTCATCTCTGGGGTCATATCTGACAAGGGTCTTGAATATGCCAAGGAGTTGCTGATAGAGAAGGGTATTGCTTCCATTCTTATGCTTCAGCTGCCAGAGATTGAAAATTCTGCACAGGTTCCTCTTGTAGGAAATGCTCAAGTGGTTCTTTCTAACATCACAATTACGGATGTTCAGGTCAATTCTTCATCCGTTAAGACGGGAGAGAATGGAATTGTTCTTGTTGTTTCAGGAGCCATTGTTAATTTAAGTATGAGGTGGAAGTACACTGTCAGCTCTTGGTTAATTCCAATTGGAATTTCGGATAAAGGAACTGCTTCAGTGAAGGTTACAGGTATGCAAGTGGGGCTTACAATAAATTTAAGGAACCAAGAAGGAAGTCTGAAGTTGTCTCTCTTAGATTATGGATGTTATGTGGGAGACATGTCTATAAAGTTGGACGGAGGTGTATCTTGGCTTTACCAACTGCTAGTAGATGCTTTCGAAGGGAATATAGCTTCTGCCATTGAAGAGGGCATTTCAGAGAAAATAAAAGAAGGGATAGTGAAGCTTGACAATTTTTTGGAATCTCTTCCAAAGAATATCTCACTAGACAAAACTGCTACACTAAATGTATCTTTTGTTGGCAATCCTGTGTTGAGCAGTTCCTCCATTGCAATTGCAATTAGTGGTTTATTCACAGAGAAAAAGGAAGTTTTAGTACCTCAAGGTTACCACCAGAAAGAATTGAAGGTTTCTGCTGCCTGTGGTGGTTTACCAAAGATGATAAAAGTATCAATACATGAAAATGTGTTCAAATCTGCTTCCCAAGTCTACTTCAATGCAGGTAAAATGCAATTGATTGTTGATGAACTTCCTGATCAGGCCATTTTGAACACTGCTGAATGGAGATTCATAGTTCCCGAATTATACAAGCGATATCCAAATGATGACATGCAGCTTAACATCTCTATGTCTTCTCCACCAGTTATACAAGTGACATATCAAGATGTTGGTGCAACTATTCTTGTAGATATAACTATTGAGGTTCTGGAAGATTTTGAAGTCATACCTGTTGCATCCATCTCAGTGGAAATCAGTGCTTCATGTGCTGTAGAAATTGTAGGAAATGACATTGTGGGTAGGCTCACATTACAGGAATTTTCTACATACTTGAAATGGAGCAAAATAGGGAAACTGCACATGCGTCTGATTCAGTCACTAATGTCAAGTGTCCTCAAAACTGTTGTCCTTCCATACTTGAACTTCAAATTAAAGAGAGGATTTCCATTACCAATTATTGATGGTTATGGCTTTCAGAATGCTATCATCTTGTACAACCATCCATGGATTGCAGTGTGTAGTGATGTTTTCTTCATAGAAGATTACTATTTCGGTCAACAATCATCTTCAGCTTATGTTTCATAG 1488 0.3878 MAPSIILSVLCLLLVLTCGYVQPLEEGFISGVISDKGLEYAKELLIEKGIASILMLQLPEIENSAQVPLVGNAQVVLSNITITDVQVNSSSVKTGENGIVLVVSGAIVNLSMRWKYTVSSWLIPIGISDKGTASVKVTGMQVGLTINLRNQEGSLKLSLLDYGCYVGDMSIKLDGGVSWLYQLLVDAFEGNIASAIEEGISEKIKEGIVKLDNFLESLPKNISLDKTATLNVSFVGNPVLSSSSIAIAISGLFTEKKEVLVPQGYHQKELKVSAACGGLPKMIKVSIHENVFKSASQVYFNAGKMQLIVDELPDQAILNTAEWRFIVPELYKRYPNDDMQLNISMSSPPVIQVTYQDVGATILVDITIEVLEDFEVIPVASISVEISASCAVEIVGNDIVGRLTLQEFSTYLKWSKIGKLHMRLIQSLMSSVLKTVVLPYLNFKLKRGFPLPIIDGYGFQNAIILYNHPWIAVCSDVFFIEDYYFGQQSSSAYVS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02476 495 FunFam phospholipid transfer protein-like 36 216 - -
Vimu2g02476 495 Gene3D - 32 463 - -
Vimu2g02476 495 SMART bpi2_2 277 482 IPR001124 GO:0008289
Vimu2g02476 495 Pfam LBP / BPI / CETP family, N-terminal domain 37 209 IPR017942 GO:0008289
Vimu2g02476 495 Gene3D - 36 216 - -
Vimu2g02476 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 241 IPR017943 GO:0008289
Vimu2g02476 495 Pfam LBP / BPI / CETP family, C-terminal domain 275 462 IPR001124 GO:0008289
Vimu2g02476 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 246 478 IPR017943 GO:0008289
Vimu2g02476 495 SMART bpi1_3 33 258 IPR017942 GO:0008289
Vimu2g02476 495 PIRSF Lipid_binding_protein 6 482 IPR030675 GO:0005615|GO:0008289
Vimu2g02476 495 PANTHER OS06G0309200 PROTEIN 2 488 IPR045897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02476 Vimu-Chr2 20487225 20490299 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02476 K05399 - gmx:100815362 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02476 2 20487225 20490299 Vimu2g02476 2 20487225 20490299 ECH
Vimu2g02476 2 20487225 20490299 Vimu1g00376 1 2224463 2227487 PCT