Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00376 GTTAAACAACTTGGGCTGCATAATGATATTGGCTTGATCGATCCCTCAGAAGGCTCCACCTGCAAAATTGGAATGACACCCTCAACCTGTTTCCTTCTTTTATCCCTTCTGCTCCTTTCATCCTCCACGAGGGGTGTTCAAGATCATGAAGAGGGTTTCATCTCTATCACCATATCTGATAAGGGTCTCGATTTTGCCAAGGATATTCTGATAGACCAAGCTGTTGACTCTATTACTCTGTCTCAATTGCCAGAGATTGAGGAGACTGTTCAAGTCCCTCTTGTTGGAAAAGCCAACGTTGTTCTTTCTGAAATCACTATCAATGATATCCAAGTAAATTCTTCATCTGTTAATACAGGAGAAACAGGCATCACTGTTGTTGTTTCAGGTGCCACAGCTAACTTGAGTTTGAAGTGGAGGTACTCTGTCAGCAGTTGGTTAGTCCCAATTGGAATTTCTGATAGTGGAACCGCAACTGCAGAGGTTAATGATTTACAAGTTGGACTTACTGTGAATCTAACGAATCAAGAAGGAACTCTTAAGCTGCTTCTCCTGGATTCTGGATGCCATGTTAGAGATTTATCCATAAAGTTGCATGGTGGAGCAGCTTGGCTTTACCAAGTGCTAGTAGATGCTTTTGCAGGAAGTATAGCATCTGGAGTTGAAGAGGCAGTTTCTGATCAAATAAATGAGGGGATATCAACTCTTGATGTTTTATTACAATCTCTTCCAAAGACTTTCCCAATAGACGAAACAGCTGCTCTAAATGTTTCTTTCGTGAACAATCCTGAGCTAAGTGATTCTGCTATTGAATTACAAATTAATGGTTTATTCATAGGAAGGAATGAAATTTTGTCACCTCAAGGTTACCGCAGAGGTTCAGACGTTTCTGTTTCCGGTGCCAACGCTTCGCCAAAGATGATAACAATTTCGTTACATGAAAATGTTTTCAAATCCGCTTCCTTGGTTTACTTCACTGCAGATACTTTGAAATGGACTGTTGATGAACTGCCTGATCAGAACCTTCTGAATACTGCTGAATGGAGATTCCTTATTCCTCAGTTATACAAGCAATATCCAAACGATGACATGAATCTTGATGTCTTTGTGTCTTCTCCACCGGATATACAAGTGACAAACAAAGATGTTGGTGTCCAAATTTCCATTGACATAATACTTAATGTTCTGGAAGCTGGTGAAGTCGTACCTGTTGCATGCATCTCGGTGGATTTTAGTGCATCTTGTGCTGCGGAGATCATAGGAAACAATCTTGCTGGTTGGCTTAAATTGAACAAGTTTTCGACATACTTGAAATGGAGTAAAATAGGGAAACTGCACTTGAATCTGATTCAGTCAGTGACATCAGCTGTCCTCAAAACCGTTCTCATACCATACCTGAACTCACAGTTAGTGAGGGGAATTCCACTGCCAATTCTTAATGATTTTGCTCTTGATAATGCTCGTATATTGTATGCTCCCCCATGGATTACTGTGTCCAGTGATGTTTCTTTCTTAGGACACTATCATCACAAGCATCTACCAGCATATGTATCATAA 1557 0.404 VKQLGLHNDIGLIDPSEGSTCKIGMTPSTCFLLLSLLLLSSSTRGVQDHEEGFISITISDKGLDFAKDILIDQAVDSITLSQLPEIEETVQVPLVGKANVVLSEITINDIQVNSSSVNTGETGITVVVSGATANLSLKWRYSVSSWLVPIGISDSGTATAEVNDLQVGLTVNLTNQEGTLKLLLLDSGCHVRDLSIKLHGGAAWLYQVLVDAFAGSIASGVEEAVSDQINEGISTLDVLLQSLPKTFPIDETAALNVSFVNNPELSDSAIELQINGLFIGRNEILSPQGYRRGSDVSVSGANASPKMITISLHENVFKSASLVYFTADTLKWTVDELPDQNLLNTAEWRFLIPQLYKQYPNDDMNLDVFVSSPPDIQVTNKDVGVQISIDIILNVLEAGEVVPVACISVDFSASCAAEIIGNNLAGWLKLNKFSTYLKWSKIGKLHLNLIQSVTSAVLKTVLIPYLNSQLVRGIPLPILNDFALDNARILYAPPWITVSSDVSFLGHYHHKHLPAYVS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00376 518 PIRSF Lipid_binding_protein 28 509 IPR030675 GO:0005615|GO:0008289
Vimu1g00376 518 Pfam LBP / BPI / CETP family, N-terminal domain 62 236 IPR017942 GO:0008289
Vimu1g00376 518 PANTHER OS06G0309200 PROTEIN 30 514 IPR045897 -
Vimu1g00376 518 SMART bpi2_2 302 500 IPR001124 GO:0008289
Vimu1g00376 518 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 56 266 IPR017943 GO:0008289
Vimu1g00376 518 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 269 504 IPR017943 GO:0008289
Vimu1g00376 518 Pfam LBP / BPI / CETP family, C-terminal domain 302 502 IPR001124 GO:0008289
Vimu1g00376 518 Gene3D - 61 241 - -
Vimu1g00376 518 Gene3D - 55 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00376 Vimu-Chr1 2224463 2227487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00376 K05399 - gmx:100804747 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00376 1 2224463 2227487 Vimu1g00376 1 2224463 2227487 ECH
Vimu2g02476 2 20487225 20490299 Vimu1g00376 1 2224463 2227487 PCT