Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02407 ATGAATGTTCTGGTTCTAGGGCGCTTTTTCACTTCTCCATTATATAAGACTTCCCCTCTCACTCCCTCCCAAATCCAATTCTCACCCATTTTCCTTCCTCCCTTAAAGTTCCAACCTTTGCAGGCAATTCATCTCTTCTCTCTCCACATGGCCACTTGCGTGGACGCTCCAACCCCTCTTTCTCGCAAGCCAAAAGCCTCCAATTCCGATGACCATTCTTTCAATTACGTCAAATTCTGCCGACCCACTTTCTCCGATCGTGTTCCCTGTTTACCCATTTGCAAGAATCGGGAGATGGCCTTCTCACGTGTGGAGGACTTGGACACACGTGTGGAGGGTGGTGTTGGTGTTCTTGAGTTCGAGGCTGTTGATCTTTGGTTGAAGATTCAGGAGGAGGCCAGGTCCGATGTGGATCAAGAACCTATTTTGTCTAGTTACTATTTCAGTTCCATTTTGTCCCACAAATCATTAGAGAGTGCCTTGGCCAACCAACTCTCCACCAATTTGAGCAGTTTGAGCCTTCCAAGCAGTACCCTCTTTGATCTTTTCTTGGGTGTTTTGGTTGAGGATGGTGGAGATGACATCATAGGTGCTGTGAAGGATGATTTAGTTGCTGTTAAAGAGAGAGACCCTGCATGCATTAGTTATGTGCATTGTTTGTTAAATTTCAAAGGGTTTCTTGCATGTCAGGCTCACAGGATTGGTCACAAATTGTGGCTTCAAGGGAGGAGGGTTCTGGCCCTGTTGATTCAGAATAGGGTGTCTGAGGTTTATGCTGTGGATATTCATCCTGGTGCACAAATTGGACGTGGAATTTTGTTGGATCATGCTACTGGGCTTGTGGTGGGGGAGACTGCAACTATTGGTAATAATGTCTCAATTTTGCATAATGTGACTTTGGGAGGGACTGGTAAGTCAAGTGGCGATAGGCACCCTAAGATTGGTGATGGGGTATTGATAGGTGCAGGGACTTGTATTTTGGGAAATATTAAGATTGGTGATGGGGCTAAGATTGGTGCTGGTTCTGTTGTGTTGAAGGATGTTCCACCAAGGACTACTGCTGTTGGGAACCCTGCTAGGTTGATTGGAGGGAAGGACAACCCTATTAAATTGGACAAGATGCCTAGTTTTACCATGGATCATACTTCATACATCTCTGAGTGGTCTGATTATGTTATTTAG 1182 0.4535 MNVLVLGRFFTSPLYKTSPLTPSQIQFSPIFLPPLKFQPLQAIHLFSLHMATCVDAPTPLSRKPKASNSDDHSFNYVKFCRPTFSDRVPCLPICKNREMAFSRVEDLDTRVEGGVGVLEFEAVDLWLKIQEEARSDVDQEPILSSYYFSSILSHKSLESALANQLSTNLSSLSLPSSTLFDLFLGVLVEDGGDDIIGAVKDDLVAVKERDPACISYVHCLLNFKGFLACQAHRIGHKLWLQGRRVLALLIQNRVSEVYAVDIHPGAQIGRGILLDHATGLVVGETATIGNNVSILHNVTLGGTGKSSGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKDNPIKLDKMPSFTMDHTSYISEWSDYVI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02407 393 FunFam Serine acetyltransferase 261 386 - -
Vimu2g02407 393 FunFam serine acetyltransferase 1, chloroplastic 111 260 - -
Vimu2g02407 393 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 320 348 IPR018357 GO:0016740
Vimu2g02407 393 NCBIfam serine O-acetyltransferase 199 360 IPR005881 GO:0005737|GO:0006535|GO:0009001
Vimu2g02407 393 Gene3D Hexapeptide repeat proteins 261 382 - -
Vimu2g02407 393 PANTHER SERINE ACETYLTRANSFERASE 121 393 - -
Vimu2g02407 393 SMART SATase_N_2_a 125 231 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vimu2g02407 393 Pfam Bacterial transferase hexapeptide (six repeats) 311 345 IPR001451 -
Vimu2g02407 393 SUPERFAMILY Trimeric LpxA-like enzymes 125 363 IPR011004 -
Vimu2g02407 393 Pfam Serine acetyltransferase, N-terminal 125 231 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vimu2g02407 393 CDD LbH_SAT 258 358 IPR045304 -
Vimu2g02407 393 Gene3D serine acetyltransferase, domain 1 117 260 IPR042122 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02407 Vimu-Chr2 19677157 19679681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02407 125 381 Miscellaneous Gene Families AT2G17640 53.307 7.22e-88 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02407 K00640 - gmx:606507 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02407 2 19677157 19679681 Vimu2g02407 2 19677157 19679681 ECH
Vimu2g02407 2 19677157 19679681 Vimu1g00311 1 1860367 1861425 PCT