Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00311 ATGTTGAGAAGGCACTCCCTTCTGAGTTCAACACCAAAACAAGTGTCCCTCTTTTTTGTTAGCCATTTCCATTCCACCCTTTTCACTCCATCACCAAAACAAGTGTTCCAAACCCATCATCGTTGGTGGGGTTACCCCAGAAGCTTCAAACCCAGTTTCAACCCCTCCCCACCCTTTTGCAGACACAAAGCCAGCACCTTGCAGAGTGGTTCCTCTGTAGAACAAATTGAAGATGTTGAAGTTGCCGACCGCGATGTCTGGATGAAAATGAAGGATGAAGCAAGATTTGATGTCACTGTAGAACCCATCTTGTCAGGTTACTACAACACTTCCATTCTCTCTCACAAATCATTGGAAACGGCGTTGGCCAATCACCTTGCCGTCAAACTCAGCAATGCATCCCTTCCTTGCAGCACCCTTTCTGATCTTTTTGTCACGGTTTTGGAAACCGATGAAGCCATCATGGCTGCTGTGAAGAGTGATCTGATTGCAGTTAAGGAGAGAGACCCGGCATGCCTGAACCTCGTGCACTGCTTCTTGAATTTCAAAGGCTTTCTGGCATGTCAAGCTCACAGGGTGGCTCACAAACTGTGGCTGCAGAGAAGGAAGGTTCTTGCTGTCATGATTCAGAACCGGGTTTCTGAGGTTTTTGCGGTGGATATTCATCCGGGGGCTAAGATTGGAAGTGGGATTTTGCTGGATCATGCAACTGGGATTGTGGTGGGAGAGACGGCTGTGATAGGGAACAATGTGTCAATTCTGCATAGTGTGACATTGGGAGGGACTGGTAAGGTTTCTGGAGATAGGCACCCGAAAATTGGTGATGGGGTTCTGATAGGTGCTGGAACTTGTATTTTGGGGAATATTAAGGTTGGTGAAGGGGCAAAGATTGGTGCTGGTTCGGTTGTCATTAAGGATGTTCCTCCAAGGACTACAGTTGTAGGTAACCCTGCTAAGCTGGTAGGAGGAAAGAACAACCCTGTTAAGTTGGATAAGATTCCCAGCTTAACCATGGACCATACTTCACATATTTCTGACTTCTATGATTATTGTGTTTAG 1059 0.4655 MLRRHSLLSSTPKQVSLFFVSHFHSTLFTPSPKQVFQTHHRWWGYPRSFKPSFNPSPPFCRHKASTLQSGSSVEQIEDVEVADRDVWMKMKDEARFDVTVEPILSGYYNTSILSHKSLETALANHLAVKLSNASLPCSTLSDLFVTVLETDEAIMAAVKSDLIAVKERDPACLNLVHCFLNFKGFLACQAHRVAHKLWLQRRKVLAVMIQNRVSEVFAVDIHPGAKIGSGILLDHATGIVVGETAVIGNNVSILHSVTLGGTGKVSGDRHPKIGDGVLIGAGTCILGNIKVGEGAKIGAGSVVIKDVPPRTTVVGNPAKLVGGKNNPVKLDKIPSLTMDHTSHISDFYDYCV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00311 352 Pfam Serine acetyltransferase, N-terminal 86 190 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vimu1g00311 352 Gene3D Hexapeptide repeat proteins 220 340 - -
Vimu1g00311 352 SUPERFAMILY Trimeric LpxA-like enzymes 87 322 IPR011004 -
Vimu1g00311 352 CDD LbH_SAT 217 317 IPR045304 -
Vimu1g00311 352 PANTHER SERINE ACETYLTRANSFERASE 78 351 - -
Vimu1g00311 352 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 279 307 IPR018357 GO:0016740
Vimu1g00311 352 SMART SATase_N_2_a 86 190 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vimu1g00311 352 Pfam Bacterial transferase hexapeptide (six repeats) 270 304 IPR001451 -
Vimu1g00311 352 NCBIfam serine O-acetyltransferase 158 319 IPR005881 GO:0005737|GO:0006535|GO:0009001
Vimu1g00311 352 FunFam Serine acetyltransferase 220 346 - -
Vimu1g00311 352 Gene3D serine acetyltransferase, domain 1 68 219 IPR042122 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00311 Vimu-Chr1 1860367 1861425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00311 86 348 Miscellaneous Gene Families AT2G17640 52.045 1.96e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00311 K00640 - gmx:100820316 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00311 1 1860367 1861425 Vimu1g00311 1 1860367 1861425 ECH
Vimu2g02407 2 19677157 19679681 Vimu1g00311 1 1860367 1861425 PCT