Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02350 ATGGGTGGTGGAAATCAAGAGGCTGTCAAGCAGTTGCAGTCCCTCATGGAAAATGTGGATGAGCAGCTGAAGAACACATTTCAGGTATGGCTTTTGATTTGCTTGATCTTGGGGGTTGGGAATGAGTCGGTGATCTTTTCTGAAATATTTCCCTTTTTGGTTCAGAACATGCACCAAGGTTATCCAGCTGAAACATTAATACGGTTTCTCAAAGCAAGGGATTGGCATGTTGCCAAAGCTCATAAAATGTTAAGTGATTGTTTGAACTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAACGAAGCCTATTCCTTCGGATTTGTATAGAGCCATACGGGATTCTCAACTCATAGGAATGTCTGGTTACTCTAAGGAGGTGGCAGGGTGCATTGACATTGGCTCAGTAATAGGAGTGGGGGCCACCAGAAGTGCACGACCCCCTAAGATTTCACATCAATGCTTTATCCGGATGGGTCTACCGGTCATTGCTGTTGGTGTTGGACTCAGTACATATGATAAAGCTTCTGACAAATACTATATACAATCACACATTCAAATCAATGAATATAGGGATCGAGTGATCTTGCCAACAGCTACAAGGAAGCATGAACGGTACATTGGCACCTGTGTGAAAGTCTTGGATATGACTGGTTTAAAGTTTTCAGCATTGAACCAATTGAGGTTGTTGACTGCTATATCCACAATAGATGACTTGAACTACCCGGAAAAGACAGACACATACTATATTGTTAATGCACCATATGTATTCTCTGCATGTTGGAAGCCTCTTTTGCAAGAAAGAACAAGGAGGAAAATCCAGGTCCTTCAAGGTTGCGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCCAAACATAATGCATCAGGAAACAATGAAAATTGTTTCTCCTTCAATCATGTTTTCCACCAACAACTCTACAATCACATCAAGCATCAAGCTATCATTATGGAGTCAATCTCACCAATCAGACAAGGGTCCTTCTATGTGGACATTCCAGAGCCAGACCCGGATGATGCCAAAATAGCCAAAACCATAGAAACTGAGTTCCACAAATTGGAGAATCAGAAAAATGGCTTCACCAATTCACGAAATGGCGTTACAGTCAATGGCCATCGAAATACAAGCTACTAA 1197 0.4177 MGGGNQEAVKQLQSLMENVDEQLKNTFQVWLLICLILGVGNESVIFSEIFPFLVQNMHQGYPAETLIRFLKARDWHVAKAHKMLSDCLNWRVENEIDKVLTKPIPSDLYRAIRDSQLIGMSGYSKEVAGCIDIGSVIGVGATRSARPPKISHQCFIRMGLPVIAVGVGLSTYDKASDKYYIQSHIQINEYRDRVILPTATRKHERYIGTCVKVLDMTGLKFSALNQLRLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKPLLQERTRRKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHNASGNNENCFSFNHVFHQQLYNHIKHQAIIMESISPIRQGSFYVDIPEPDPDDAKIAKTIETEFHKLENQKNGFTNSRNGVTVNGHRNTSY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02350 398 Coils Coil 5 25 - -
Vimu2g02350 398 CDD SEC14 157 296 IPR001251 -
Vimu2g02350 398 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 159 305 IPR001251 -
Vimu2g02350 398 MobiDBLite consensus disorder prediction 378 398 - -
Vimu2g02350 398 Gene3D - 3 93 - -
Vimu2g02350 398 SUPERFAMILY CRAL/TRIO domain 158 296 IPR036865 -
Vimu2g02350 398 Pfam CRAL/TRIO, N-terminal domain 10 86 IPR011074 -
Vimu2g02350 398 SMART CRAL_TRIO_N_2 62 87 IPR011074 -
Vimu2g02350 398 SUPERFAMILY CRAL/TRIO N-terminal domain 21 100 IPR036273 -
Vimu2g02350 398 Pfam CRAL/TRIO domain 159 296 IPR001251 -
Vimu2g02350 398 Gene3D - 149 324 IPR036865 -
Vimu2g02350 398 SMART sec14_4 147 302 IPR001251 -
Vimu2g02350 398 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02350 Vimu-Chr2 19026013 19031038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02350 56 378 Acyl Lipid Metabolism Gene Families AT1G55840 60.856 3.32e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02350 K26544 - gmx:100817955 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02350 2 19026013 19031038 Vimu1g00286 1 1679690 1685711 PCT