Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00286 ATGTGTATTACTAATCAGGAAGTTATCAAGCAGTTGGACTCCCTTTTGGAAAACTTGGATGAGCAACAGAAGAACACATTCCAGAATATGCACCAGGGCTATCCAACAGAAACATTAGTGCGGTTTCTCAAAGCAAGGGACGGGAATGTTGTGAAAGCACATAAAATGTTGATTGATTGTTTACAATGGAGAGTAGAAAATGAGATTGACAATGTTTTAGCGAAGCCTATACCACCTGGTTTATACAGACGTTTGCGAGATTCTCAACTTGTGGGAATGTCTGGTTTCACAAAGGAGGGCTTACCTGTCATTGCTATTGGTGTTGGACTCAGCACATTTGATGAATCGTTTGACAAATACTATATACAGTCGCACATCCAAATGAATGAATATAGGGATCGAGTGATCATGCCAAGAGCTACAAAGAATCATGGAAGACACATTGATACTTGTGTGAAAGTCTTGGATATGACTGGTTTAAAACTCTCAGCGCTGAACCAATTGAAGCTTTTGACAGCTATAACAACAATAGATGACTTGAACTATCCAGAAAAGACTGACGCATATTACATAGTTAACGTTCCATATGTATTCTCAGCGTGTTGGAAGGTTGTAAGGCCTCTTTTGCAGGAAAGAACAAGGAAGAAAGTCCATGTCCTCAAAGGTTGTGGCACGGAGGAATTACTCAAGGTAATGGACTATGCATCCCTCCCACATTTTTGCAGAAAGGAGGATTCCAGGGTGCCCCAACATCATGAAGCTGGAAATACTGAAAATTGTTTCTTCATTGATCATGTCTTCCATAAACAACTACATAATTACATCGAGCAGCAAGCTATATTCATAGAGTCCATATCTCAGGATTCTTTCCATGTAGATTTACCTGAGCCAGACCCAGTTGATGCCAAAATTGCCAAAACTATAGAAACTGAGTTCCATAAACTGGAAATTCAGAATGGCCTTACCAATTGA 972 0.3981 MCITNQEVIKQLDSLLENLDEQQKNTFQNMHQGYPTETLVRFLKARDGNVVKAHKMLIDCLQWRVENEIDNVLAKPIPPGLYRRLRDSQLVGMSGFTKEGLPVIAIGVGLSTFDESFDKYYIQSHIQMNEYRDRVIMPRATKNHGRHIDTCVKVLDMTGLKLSALNQLKLLTAITTIDDLNYPEKTDAYYIVNVPYVFSACWKVVRPLLQERTRKKVHVLKGCGTEELLKVMDYASLPHFCRKEDSRVPQHHEAGNTENCFFIDHVFHKQLHNYIEQQAIFIESISQDSFHVDLPEPDPVDAKIAKTIETEFHKLEIQNGLTN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00286 323 Coils Coil 5 29 - -
Vimu1g00286 323 SMART sec14_4 85 246 IPR001251 -
Vimu1g00286 323 CDD SEC14 90 240 IPR001251 -
Vimu1g00286 323 Gene3D - 4 276 IPR036865 -
Vimu1g00286 323 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 238 IPR001251 -
Vimu1g00286 323 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 322 - -
Vimu1g00286 323 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Vimu1g00286 323 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Vimu1g00286 323 Pfam CRAL/TRIO, N-terminal domain 10 59 IPR011074 -
Vimu1g00286 323 SUPERFAMILY CRAL/TRIO N-terminal domain 16 75 IPR036273 -
Vimu1g00286 323 SUPERFAMILY CRAL/TRIO domain 82 241 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00286 Vimu-Chr1 1679690 1685711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00286 29 315 Acyl Lipid Metabolism Gene Families AT1G55840 65.979 5.08e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00286 K26544 - gmx:100815791 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00286 1 1679690 1685711 Vimu1g00286 1 1679690 1685711 ECH
Vimu2g02350 2 19026013 19031038 Vimu1g00286 1 1679690 1685711 PCT