Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01945 ATGATGGCGGAACACCAAAGAATTCATCCTGTTCATGATGTGGAGGCACCACACAGACCTCTGGTGCCTGGAAACAGTACTAAATCTGATAGGGTTTTTCCTAAACGGACCTTTCCAGTGATGCATTCGAAGCCACCAAAGAGAAGAAGAAGCTGTTGCTGCAGGTTTTTGTGTTGGACGCTTAGCATATTGCTGATTTTGATCATTGCTATTGGCATCACTGTAGGGATCATGTACCTTGTTTTTAGGCCAAAGCTCCCAAAATACTCGGTGGATGAACTGAGGATAACCCAGTTCGATGTTTCTGACAACAACACCCTCTCAGCAACCTTCAATGTGGCAATCACTGCAACAAATCCAAACAAGAAGATTGGGATATACTATGAGGGTGGAAGCCACATAAGGGCTTTGTACATGGGCACACAATTGTGTGAAGGGTCTTTGCCAAAGTTCTACCAGGGTCACAGGAACACCACAGTGCTTGATCTCTCTCTATCAGGTGAAGCACAGGATGCAAGTTCCTTAACAAGTAAAATTCAGGAGCAGCTGCAGCAGACCAACAATATTCCTCTTGATCTTAAAGTTAATCAACCTGTTAGGGTTAAGCTTGGCAAATTGAAGCTCTTCAAAGTCAAGTTCAGGGTTAGCTGCAAGCTTGTGGTGGATAATCTTGGTGCTAGTAATGATGTTAGAATTTCAAGCAGCAGTTGTAAGTTCAGACTTAGGCTATGA 732 0.4358 MMAEHQRIHPVHDVEAPHRPLVPGNSTKSDRVFPKRTFPVMHSKPPKRRRSCCCRFLCWTLSILLILIIAIGITVGIMYLVFRPKLPKYSVDELRITQFDVSDNNTLSATFNVAITATNPNKKIGIYYEGGSHIRALYMGTQLCEGSLPKFYQGHRNTTVLDLSLSGEAQDASSLTSKIQEQLQQTNNIPLDLKVNQPVRVKLGKLKLFKVKFRVSCKLVVDNLGASNDVRISSSSCKFRLRL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01945 243 Pfam Late embryogenesis abundant protein 115 218 IPR004864 -
Vimu2g01945 243 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 29 224 - -
Vimu2g01945 243 SUPERFAMILY LEA14-like 72 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01945 Vimu-Chr2 14148034 14149996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01945 47 243 EF-hand Containing Proteins AT5G21130 31.472 1.79e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01945 - - gmx:100789322 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01945 2 14148034 14149996 Vimu2g01945 2 14148034 14149996 ECH
Vimu2g01945 2 14148034 14149996 Vimu1g01206 1 9438001 9438792 PCT