Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01206 ATGGCTGCAGATCCTCAGAAAATTCATCCTGTCTATGATGTTGAAGCACCAAACCACCCTTCAGCACCTTTGGTGCCAAGAAGCATGTCTAAATCAGATGCAGGTGATCCAGAGAGAGTAGTGCTACAACAACAGCAGCAACAGCAACAACAACATCCTCCACAACACACCATTCCTGTGATGCATTCAAGGCCAACAAAGAAAAGAAGAAGCTGCTGCTGCAGGTTTTTCTGTTGGTTGATAAGCATATTGGTTATTCTGATTGTGGCCATTGGTATCACAGTTGGGATACTATACCTTGTGTTCAGACCAAAGGTTCCAAAGTACTCTGTGGATGAGCTTATAGTCACACAGTTTGATATCTCTGACAACAACAGTTTATCTGCCACTTTCAACTTGACAATCACTGCCAGAAACCCTAACAAGAAGATTGGAATATACTACAGAGGTGGCAGCCATATAAGTGCTTGGTATGATGACACAAAACTGTGTGAAGGGTCTTTACCAAAGTTCTATCAAGGTCACCGCAACACCACAGTGCTCAGTATCCCTCTCACTGGTCAAACACAGGATGCTACTGGTCTGCAAACTAGCCTTCAGCAGCAGCTGCAAGACACAGGAAATGTGCCTCTCAATTTGAAGGTGAATCAGCCTGTGAGGATCAAATTTGGGAAGTTGACACTGTTTACAATCAAGTTCAGGGTTAGGTGCAATATTGTGGTGGACAACCTTAGTGCTAATAGTTCTATTAGAATTCAGAGCAGTAGTTGTAAATTCAGGTTAAGGCTGTGA 792 0.4318 MAADPQKIHPVYDVEAPNHPSAPLVPRSMSKSDAGDPERVVLQQQQQQQQQHPPQHTIPVMHSRPTKKRRSCCCRFFCWLISILVILIVAIGITVGILYLVFRPKVPKYSVDELIVTQFDISDNNSLSATFNLTITARNPNKKIGIYYRGGSHISAWYDDTKLCEGSLPKFYQGHRNTTVLSIPLTGQTQDATGLQTSLQQQLQDTGNVPLNLKVNQPVRIKFGKLTLFTIKFRVRCNIVVDNLSANSSIRIQSSSCKFRLRL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01206 263 Gene3D - 101 245 - -
Vimu1g01206 263 Pfam Late embryogenesis abundant protein 134 238 IPR004864 -
Vimu1g01206 263 MobiDBLite consensus disorder prediction 39 57 - -
Vimu1g01206 263 MobiDBLite consensus disorder prediction 1 63 - -
Vimu1g01206 263 SUPERFAMILY LEA14-like 113 226 - -
Vimu1g01206 263 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 43 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01206 Vimu-Chr1 9438001 9438792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01206 37 263 EF-hand Containing Proteins AT5G21130 30.472 1.29e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01206 - - gmx:100782663 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01206 1 9438001 9438792 Vimu1g01206 1 9438001 9438792 ECH
Vimu2g01945 2 14148034 14149996 Vimu1g01206 1 9438001 9438792 PCT