Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01576 ATGCGAGAGACTGTTAGATTGTTCTATCCAAAGGCTGAGTTGACCTTTTTGACTGGCGCAACAAACTCAACACTGACCTCTTTTCTGTGTCTTTCTTATAGCGTGAGAATGTTAGAGAAAGTGGAGGAGTTAAATATGGACAAAGTTATAGAAGAATTTGAGTTACTGTCAAAGGACGCGGAAAGGGTTCAGAGGGAAACTCTGAAAAAGATTTTGGAAGATAACGCGTCAGCTGAGTATTTGCAGAGTTTGGGTCTCAATGGAAGAACTGACCCCGAGAGTTTCAAGGCTTGTGTTCCACTCGTTACCCACAAAGAATTGGAACCTTACATATACAGAATTATCGATGGCGATGCTTCTCCTATTCTCACTGGCAAACCCATCACAACCATGTCTTTAAGTTCTGGCACTACCCAGGGGAAGCCAAAATATGTACCGTGGAACGATGAATTGTATGAAACCACAATGCAGATATACCAGACCTCTTTTGCCTTTAGAAACAGAGAGTTTCCCATAAAAAATGGGAAGGCTTTGAGCTTTATATACGGAAGCAAGCAGTTCAAAACAAAGGGGGGTCTGGCGGCTAGAACTGCTACAAGCAATGTGTTCAGTAATGCTGGTTATAAGCGTGCAATGAGGGCACTGCAATCCCAATGCTGCAGCCCAGACGAAGTGATATTTGGTCCTGATTTTTTCCAATCATTGTATTGCCATCTATTGTGTGGTCTTATATTCCGGGACGAGGTTCAATTTGTGTCTTCTACATTTGCTCACAGTATTGTCCATGCTTTCAGAACCTTTGAACAAGTGTGGGAAGAGCTGTGTACTGATATCAGAGAAGGGGTTCTCAGCAGCAGGGTCATCGTACCTTCCATTCGAATGGCTATGTCTAAACTGATGAAGCCAAACCCGAAATTAGCCAACTTGATCCACAAAAAATGTACGGGGTTGAGCAACTGGTACGGGTTGATACCAGAGCTTTTTCCCAATGCTAAGTATATTTATGGCATCATGACTGGATCAATGGAGCCTTATTTGAAAAAGTTGAGGCACTATGCAGGGGAGCTGCCTCTGTTGACTGCTGACTATGGATCTTCTGAGGGATGGATTGCAGCAAATGTGAACCCACAATACCCCCCTGAGTATGCCACGTATGCTGTGCTTCCTCACATTGGTTACTTCGAATTCATTCCTCTCTCAGAGCTTGACAACACCAGGGGTCAACCAGATTTCCTCTGTATTGATCCTCAGCCTGTGAGCCTCACTCAAGTCAAGGTTGGTGAAGAGTATGAAGTTGTTATGACCAATCCAGCAGCTCACTGTCCCAGTGCTGCATATGTTGGCCTTGTGCACGATAGGGAGGGATTATACCGGTATAGATTGGGGGATGTGGTGAAGGTTATGGGATTCCACAACTCAACTCCAGAACTGAAGTTTGTTCGGCGTAGCAGTCTTCTGCTAAACATTAACATTGACAAGAACACCGAGAAGGATTTACAGGTAGCTGTGGAAGCAGCTGCAAAGTTGTTAGCGGAAGAAAAAACGGAAGTTGTTGATTACAGTAGCCACGTTGATTTATCCGAAGAACCGGGACACTACGTCATCTTCTGGGAAATCAATGGGGAAGCAAGTGAAGAACTCCTCCAAGAATGCTGTAACTGTTTGGACAAGTCTTTCGTTGATGCAGGCTACACCAGTTCCCGCAAAGTGAACTGCATCGGTGCCCTCGAACTACGAGTTGTTCGGAGAGGAACATTCCAGAAGATTCTGGATCATTACCTAGGACTAGGAACCGCAGTTAGTCAGTATAAGACACCGAGATGTGTTGGTCCTACAAACGGCGCGGTGCTGCAGATCTTGAGTGAAAACGTTGTGAATAACTATCTCAGTACTGCTTTCTAA 1902 0.4469 MRETVRLFYPKAELTFLTGATNSTLTSFLCLSYSVRMLEKVEELNMDKVIEEFELLSKDAERVQRETLKKILEDNASAEYLQSLGLNGRTDPESFKACVPLVTHKELEPYIYRIIDGDASPILTGKPITTMSLSSGTTQGKPKYVPWNDELYETTMQIYQTSFAFRNREFPIKNGKALSFIYGSKQFKTKGGLAARTATSNVFSNAGYKRAMRALQSQCCSPDEVIFGPDFFQSLYCHLLCGLIFRDEVQFVSSTFAHSIVHAFRTFEQVWEELCTDIREGVLSSRVIVPSIRMAMSKLMKPNPKLANLIHKKCTGLSNWYGLIPELFPNAKYIYGIMTGSMEPYLKKLRHYAGELPLLTADYGSSEGWIAANVNPQYPPEYATYAVLPHIGYFEFIPLSELDNTRGQPDFLCIDPQPVSLTQVKVGEEYEVVMTNPAAHCPSAAYVGLVHDREGLYRYRLGDVVKVMGFHNSTPELKFVRRSSLLLNINIDKNTEKDLQVAVEAAAKLLAEEKTEVVDYSSHVDLSEEPGHYVIFWEINGEASEELLQECCNCLDKSFVDAGYTSSRKVNCIGALELRVVRRGTFQKILDHYLGLGTAVSQYKTPRCVGPTNGAVLQILSENVVNNYLSTAF 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01576 633 Coils Coil 46 66 - -
Vimu2g01576 633 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 44 633 IPR004993 -
Vimu2g01576 633 Pfam GH3 auxin-responsive promoter 52 609 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01576 Vimu-Chr2 11065203 11068749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01576 48 631 EF-hand Containing Proteins AT1G23160 37.229 1.04e-129 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01576 K14506 - gmx:100794598 1074.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01576 2 11065203 11068749 Vimu9g00140 9 1662476 1665457 PCT