Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01247 ATGAGTTCTTGCATGTTAAGCCTGGATGTTGTTTCATTTTTCCAGAAGCCCATAATTCCTACTGATTTATACCGTGGCATTCGTGATTCACAACTTATAGGTTTGTCAGGTTACTCGAGAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGGCTTAGCACATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCATATTCAAATTAACGAATATCGTGATCGTGTAATATTGCCTTCTGCATCAAAGAAGCATGGGCAGCCTATTACCACATGCATAAAAGTTTTGGATATGACTGGTCTGAAGTTGTCAGCCCTGAATCAGATCAAGTTGTTAACAATAATATCATCCATTGATGATCTGAACTATCCTGAGAAAACAAATACTTATTACATTGTAAATGCCCCATACATATTTTCAGCCTGTTGGAAGGTTGTGAAGCCACTTCTGCAAGAGAGAACAAGAAGAAAAGTGCAAGTCTTACCGGGTTGTGGGCGAGATGAACTGTTGAAGATGGATTTTGCATCCCTGCCACATTTCTGTAAAAGAGAAGGCTCTGGATCATCAAAACATTCAGAGAATGGGAGTGGAAATGAAAATTGCTATTCCTTGGATCATCCTTTCCATCAGAAGCTCTACAATCACATAAAGGAGCAATCCAGAATCCATGAAGCTGTTGAACCAATCAAGCAGGGATCATTCCATGTAGATTTTCCTGAACCTCCTGCTGAGAAAGCTGAGATTGTCAAGACTTTAGAGTCTGAGCTACACAAGTTTAAGATCAACAATGGGAGTTGTGATTGA 807 0.399 MSSCMLSLDVVSFFQKPIIPTDLYRGIRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGQPITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLKMDFASLPHFCKREGSGSSKHSENGSGNENCYSLDHPFHQKLYNHIKEQSRIHEAVEPIKQGSFHVDFPEPPAEKAEIVKTLESELHKFKINNGSCD 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01247 268 Gene3D - 21 218 IPR036865 -
Vimu2g01247 268 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 10 266 - -
Vimu2g01247 268 CDD SEC14 24 172 IPR001251 -
Vimu2g01247 268 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 20 173 IPR001251 -
Vimu2g01247 268 SUPERFAMILY CRAL/TRIO domain 22 182 IPR036865 -
Vimu2g01247 268 SMART sec14_4 27 187 IPR001251 -
Vimu2g01247 268 Pfam CRAL/TRIO domain 31 164 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01247 Vimu-Chr2 8321720 8326407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01247 9 265 Acyl Lipid Metabolism Gene Families AT5G47730 74.419 2.37e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01247 K26544 - gmx:100793867 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01247 2 8321720 8326407 Vimu2g01247 2 8321720 8326407 ECH
Vimu7g01969 7 17772997 17775964 Vimu2g01247 2 8321720 8326407 PCT