Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01213 ATGCTCAGATCACTGCCCAAGCTCTCACTCCTCTTTTCCTCAGCTAGGAATCCTCGTTATCTTACAAATGCTCAGCGTTTCACATCTCAAGGGAGAAGACCAACTTCAAGAGTCAAGATTGGAGCGGCAACCACTCTTTCTATATTGTCTAAGTCAACTTCAATAATTTCATCTGCAATTGCCTCAGAAACTGCCGCACAAGATCAAATTCAACAGATCAAGCTACTAACATCAACTGATGATAATTACGGTGGTGTTACTGTGGAACTGGATCATCCTATGGATTCTTCAGAATTTATCCAAGTCCTTAGAGCTTCAGTTTCTCACTGGAGGCAGCTGGGCAAGAAAGGTGTTTGGATAAAATTACCTATTCATTTAGCCGGTCTAGTTGAAGCTTTAGTTAAGGAGGGGTTTTGGTATCATCATGCAGAACCAAATTATTTAATGCTTGTATATTGGATTCCTGATAGTCCAAGTACTATTCCTGCAAATGCCACACACAGGGTGGGGATTGGTTCATTTGTCATGAATGAAAAACAAGAGGTCCTGGTTGTTCAGGAGAATAGTGGACTATTTAAAGGAACTGGAATTTGGAAATTCCCTACTGGAGTTGTTGATCAGGGAGAAGATATTTGTGTAGCAGCAGTAAGAGAGGTCAAAGAAGAAACAGGAGTTGATTCAGAATTTGTGGAAGTATTAGCCTTCAGACAAAGTCATAATTCATTCTTTGAGAAGTCAGACTTATTCTTCGTGTGCATGTTGCGGCCCCTTTCTTTTAACATCCAAACACAGAGATTTGAGATACTGGATGCACAGTGGATGCCATTTGAGGAATATGCAGCTCAACCATTCGTCCAAAAGAGTGAGCTTTTGAAGTACATAAATGATACATGTTTGGCAAAGATGGGTGGACAATATTCTGGATTTTGTCCTGTATCTACGTCATCGAACTTTTCTGATCAAAAGAATTATTTGTACTTGAATGCTGGGACCTTAAAGAGCTCCTATTCTTCCTGA 1017 0.4012 MLRSLPKLSLLFSSARNPRYLTNAQRFTSQGRRPTSRVKIGAATTLSILSKSTSIISSAIASETAAQDQIQQIKLLTSTDDNYGGVTVELDHPMDSSEFIQVLRASVSHWRQLGKKGVWIKLPIHLAGLVEALVKEGFWYHHAEPNYLMLVYWIPDSPSTIPANATHRVGIGSFVMNEKQEVLVVQENSGLFKGTGIWKFPTGVVDQGEDICVAAVREVKEETGVDSEFVEVLAFRQSHNSFFEKSDLFFVCMLRPLSFNIQTQRFEILDAQWMPFEEYAAQPFVQKSELLKYINDTCLAKMGGQYSGFCPVSTSSNFSDQKNYLYLNAGTLKSSYSS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01213 338 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 148 164 IPR003293 -
Vimu2g01213 338 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 164 182 IPR003293 -
Vimu2g01213 338 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 252 276 IPR003293 -
Vimu2g01213 338 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 126 144 IPR003293 -
Vimu2g01213 338 FunFam nudix hydrolase 2 73 159 - -
Vimu2g01213 338 PANTHER NUDIX HYDROLASE RELATED 52 333 IPR003293 -
Vimu2g01213 338 ProSitePatterns Nudix box signature. 203 224 IPR020084 GO:0016787
Vimu2g01213 338 SUPERFAMILY Nudix 134 287 IPR015797 -
Vimu2g01213 338 FunFam Nudix hydrolase 8 168 306 - -
Vimu2g01213 338 Gene3D - 73 159 - -
Vimu2g01213 338 Pfam NUDIX domain 167 286 IPR000086 -
Vimu2g01213 338 Pfam Nudix hydrolase domain 76 154 IPR040618 -
Vimu2g01213 338 CDD Nudix_Hydrolase_12 167 298 - -
Vimu2g01213 338 ProSiteProfiles Nudix hydrolase domain profile. 166 298 IPR000086 -
Vimu2g01213 338 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 168 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01213 Vimu-Chr2 8114031 8119183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01213 K26956 - gmx:100819062 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01213 2 8114031 8119183 Vimu2g01213 2 8114031 8119183 ECH
Vimu7g01975 7 17818870 17821341 Vimu2g01213 2 8114031 8119183 PCT