Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00833 ATGGACCGGCCAAGTTCGATCGATCACGACGGCGACGTTTTCGTAGATGCGTTTCAACATTTTCCCGCCGAGGGCTCGCCGGAGCCTTCCGATTCGGCTTCCAGGCTTCCGGATCCTCCACCCGAACCTAAGTCGTACTATCCAGCTGCAACAATCCGGCGCCGGCCAGTTAGTCGCGGTTTTGTGGATACTCAATCGTCAGGATCTAGCTTGGAGAGCGATTTAGTGAATTTCAATTGGAGGAGTTTCCAACACCGCAGGAGGCATCGAAATATCAAGAAAGACGAGAATACGGAGAAACCCGATTTGGATGACCCGCAACAAGTTAATGCCTCGACGGAGGAGAACAACGAGGGCTCCACCGTAACTTCAGCTGCGAACGATGATGCAGCTGTCGACTCCGTTGACTCGGCGCCGCGACAAGGTGACTCGTCTTCGAGTTTCCTCGACCTCCCCGCGGGGTTGGCGATTAACTTATTAGAGTTTCAGATTAAGTTAATGTTCATGTTCATAACTTACCCGCTGTTGTTCGTGTTTTATTCATGCATGTTTTTCATGGATCCTTTGGGGACAACGAAGAGGGGCAAGGTTTTCCTTGTAGGGATTTTGAACAGAGGGTGGTGTGGTTTGTTTCGGTGCATTAGGCCTTATGTCAGTAGATGGTTCAAGGAGAACGAATCGGTTTGGAGCGTGGCTTTGCGGTGGGGGTGGGGGGTTTTGTGCTCAGTCTATGTTGGTTGCGTTTTGTTTGGTCTTCTGGTTTCGTCGTTTGTGTTTAGTATGTTGTTGATGAAGTATTTGGTGGAGAAGCCGATTCAGATTAGGGAGGCTTTGAACTTTGATTATAGCAAGCATAGTCCTGTCGCGTATGTGCCGATAATGTCGTGTGCTGGTGTTATTGGTGGTATAGGTTCCGAGGATAAGGATGATGATCGGAAGTGGGTGGGTGAACGGTTTATACCTTCTAAGCACAAGGTGCAAGTCACTGTTGAGTTAAGAGTGCCAGAGTCAGGATACAACAGAAACCTTGGGATCTTTCAGATCAGGGTAGATTTCCTATTGCCTAATGGTAAAGCTATTACAAGCTCAAGTCAACCTTGTATGTTAAGATTCAGAAGTCAGCTTATCCGCCTAATCACTACTCTCCTAAAGATTGTTCCTCTTGTTACTGGCTATACATCCGAAACTCAGACTCTGAATGTGAAGATGAGAGGTTTCGAAGAAGGAGATTTACCTACTTCGTGCTTGAAAGTGACCCTTGAGCAACGAGCAGAATATCAACCAGGTGCAGGCATTCCTGAAATATATGATGCATCTCTGATTATTGAATCGGAACTTCCATTGTTCAAGAGGCTTATTTGGCTTTGGAAGATGAGCATTTTTATATGGATCGCGATGATGGCATTCTTCACAGAATTACTCTTTGCTCTTGTATGTTGCACGCCTATCATTATTCCGAAAACAAGGCAAAGGCCGGATTCAGCTCGCCGTCCTGCAACCTTAAACCGTCCTCAGAACTAG 1521 0.4688 MDRPSSIDHDGDVFVDAFQHFPAEGSPEPSDSASRLPDPPPEPKSYYPAATIRRRPVSRGFVDTQSSGSSLESDLVNFNWRSFQHRRRHRNIKKDENTEKPDLDDPQQVNASTEENNEGSTVTSAANDDAAVDSVDSAPRQGDSSSSFLDLPAGLAINLLEFQIKLMFMFITYPLLFVFYSCMFFMDPLGTTKRGKVFLVGILNRGWCGLFRCIRPYVSRWFKENESVWSVALRWGWGVLCSVYVGCVLFGLLVSSFVFSMLLMKYLVEKPIQIREALNFDYSKHSPVAYVPIMSCAGVIGGIGSEDKDDDRKWVGERFIPSKHKVQVTVELRVPESGYNRNLGIFQIRVDFLLPNGKAITSSSQPCMLRFRSQLIRLITTLLKIVPLVTGYTSETQTLNVKMRGFEEGDLPTSCLKVTLEQRAEYQPGAGIPEIYDASLIIESELPLFKRLIWLWKMSIFIWIAMMAFFTELLFALVCCTPIIIPKTRQRPDSARRPATLNRPQN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00833 506 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 141 503 IPR009617 GO:0019915
Vimu2g00833 506 MobiDBLite consensus disorder prediction 1 15 - -
Vimu2g00833 506 MobiDBLite consensus disorder prediction 104 130 - -
Vimu2g00833 506 Pfam Putative adipose-regulatory protein (Seipin) 252 468 IPR009617 GO:0019915
Vimu2g00833 506 MobiDBLite consensus disorder prediction 89 146 - -
Vimu2g00833 506 MobiDBLite consensus disorder prediction 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00833 Vimu-Chr2 5107365 5109629 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00833 K19365 - gmx:100796452 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00833 2 5107365 5109629 Vimu2g00833 2 5107365 5109629 ECH
Vimu2g00833 2 5107365 5109629 Vimu11g03779 11 59836670 59839090 ECH
Vimu11g03779 11 59836670 59839090 Vimu2g00833 2 5107365 5109629 PCT