Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00613 GCTGAGGAAAGAGCCATGCAGCGTTTGCCCAAGATGATGACTAAAATCGGTGGTCCGGTATGCGACGTCTTCATCAACCACCGTGGGATCGACACCAAGAAGAACGTTGCCGGGTTGTTGTACGATAATCTTACGAGGAATATTGGAGTGAGGGCATTCTTGGACAGCATGAACATGAAACCTGGGGACAGGCTTTTCCAACACATTAATAGAGGCATTCTGGATTGCAAGGTTGGTGTTGCCGTCTTCTCTCCTCGCTACTGTGACTCCTATTTCTGCCTCCACGAGCTCGCTCTTCTCATGGAGTCCAACAAAAGGGTCGTTCCCATTTTCTACGACGTCAAACCCTCGCAGCTTAGGGTCAAGAACAACGGAACCTGCCCTCCTGCCGACCTTCAGAGGTTCGCCTTTGCACTTGAAGACGCAAAGAACACCGTGGGATTGACGTTTGATTCTTTGAACGGGGATTGGTCGGAGTTGCTGAGGAATGCTTCGGAAGCGGTGATGATGAACTTGTTGGAGGTAAAGGAAGAAAGGAAGTACGCGAAGAGGCAGCGTTGA 561 0.5045 AEERAMQRLPKMMTKIGGPVCDVFINHRGIDTKKNVAGLLYDNLTRNIGVRAFLDSMNMKPGDRLFQHINRGILDCKVGVAVFSPRYCDSYFCLHELALLMESNKRVVPIFYDVKPSQLRVKNNGTCPPADLQRFAFALEDAKNTVGLTFDSLNGDWSELLRNASEAVMMNLLEVKEERKYAKRQR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00613 186 Pfam TIR domain 23 125 IPR000157 GO:0007165
Vimu2g00613 186 Gene3D - 6 133 IPR035897 -
Vimu2g00613 186 ProSiteProfiles TIR domain profile. 19 165 IPR000157 GO:0007165
Vimu2g00613 186 SMART till_3 20 167 IPR000157 GO:0007165
Vimu2g00613 186 PANTHER COP1-INTERACTING PROTEIN-RELATED 21 183 - -
Vimu2g00613 186 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 147 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00613 Vimu-Chr2 3621924 3622601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00613 13 151 Miscellaneous Gene Families AT1G57670 29.870 6.21e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00613 - - gmx:100806903 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00613 2 3621924 3622601 Vimu2g00613 2 3621924 3622601 ECH
Vimu11g03554 11 57089590 57090303 Vimu2g00613 2 3621924 3622601 PCT