Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03554 ATGCAACATTTGCCAGCCAAGTTGTGCCGCAAACTGGCTCGTCCAGCATGCGATGTGTTCATAAACCATCGTGGCATCGACACAAAGAGGAACATCGCGGGGTTGCTATACGACAGTTTGACTAGGATGGAAGTGCGGTCATTTTTGGACAGCATGAACATGAAACCTGGGGATAGGTTGTTCGATCACATCGACAGGGCCATTCTAGGGTGCAAAGTGGGTGTTACGGTGTTTTCGCCACGTTACTGTGAGTCGTATTTTTGTCTACATGAACTCGCTCTTCTCATGGAGTCAAAGAAGAGGGTTGTGCCCATCTTCTACGACGTCAAACCTTCGCAGCTTGTGGTCAAGGACAACGGAACTTGTCCTGCTAAACAGCTTCGGAGATTCTCTTTGGCACTCGAGGAAGCTAAATACACTGTTGGATTGACCTTTGATTCTTTGAAAGGGGACTGGTCGGAGATACTGAGAGATGCTTCAGATGCAGTGATGATGAACTTGCTGGAGGTAGAAGAAGAGCGAAAAAACATGAAGAGAAAACAGTGA 546 0.4725 MQHLPAKLCRKLARPACDVFINHRGIDTKRNIAGLLYDSLTRMEVRSFLDSMNMKPGDRLFDHIDRAILGCKVGVTVFSPRYCESYFCLHELALLMESKKRVVPIFYDVKPSQLVVKDNGTCPAKQLRRFSLALEEAKYTVGLTFDSLKGDWSEILRDASDAVMMNLLEVEEERKNMKRKQ 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03554 181 Pfam TIR domain 18 122 IPR000157 GO:0007165
Vimu11g03554 181 ProSiteProfiles TIR domain profile. 15 138 IPR000157 GO:0007165
Vimu11g03554 181 Gene3D - 13 178 IPR035897 -
Vimu11g03554 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 14 180 - -
Vimu11g03554 181 SMART till_3 16 162 IPR000157 GO:0007165
Vimu11g03554 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 136 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03554 Vimu-Chr11 57089590 57090303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03554 12 146 Miscellaneous Gene Families AT1G57670 31.333 5.25e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03554 - - gmx:100798207 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03554 11 57089590 57090303 Vimu2g00613 2 3621924 3622601 PCT