Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00520 ATGGGGTTGTGCATTAAGGTTTGGTTTTGTGTATTGAGTGTGTTGGGGCTGGCAATTATGAGTGATCTTGCCAACGCTCAAGATTCACAGACAGATTATCTGAATGGACACAACCCTGCACGATCAAACGTTGGTGTGAAAAATATAGTTTGGAATGACACAGTTGCTGCTTTTGCGCAAAACTATGCTAATAAACGTAAAGATTGTCAACTGGTTCATTCAGATGGTGGTGGCATCTACGGAGAGAATATTGCAATGAGCACCGGTGACATGAGTGTTGCAGAGGCTGTGAAATTGTGGGTGGATGAGAAATCCTTCTATGACTACACTTCCAACTCTTGTATTGGTGGGGAGTGTCTGCATTACACTCAGGTTGTTTGGAGAAAATCTGTGTATCTTGGATGTGCCAAAGTACGTTGCAACAATGGCGGCACCTTCGTCACTTGCAATTATTCTCCTCCCGGCAACTATATTGGTGAAAGACCATACTAA 492 0.4329 MGLCIKVWFCVLSVLGLAIMSDLANAQDSQTDYLNGHNPARSNVGVKNIVWNDTVAAFAQNYANKRKDCQLVHSDGGGIYGENIAMSTGDMSVAEAVKLWVDEKSFYDYTSNSCIGGECLHYTQVVWRKSVYLGCAKVRCNNGGTFVTCNYSPPGNYIGERPY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00520 163 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
Vimu2g00520 163 SUPERFAMILY PR-1-like 28 163 IPR035940 -
Vimu2g00520 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Vimu2g00520 163 PRINTS Allergen V5/Tpx-1 family signature 96 109 IPR001283 -
Vimu2g00520 163 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Vimu2g00520 163 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Vimu2g00520 163 Gene3D CAP 23 163 IPR035940 -
Vimu2g00520 163 PRINTS Venom allergen 5 signature 94 109 IPR002413 -
Vimu2g00520 163 PRINTS Venom allergen 5 signature 118 137 IPR002413 -
Vimu2g00520 163 PRINTS Venom allergen 5 signature 49 67 IPR002413 -
Vimu2g00520 163 Pfam Cysteine-rich secretory protein family 34 151 IPR014044 -
Vimu2g00520 163 FunFam Putative pathogenesis-related protein 1 27 163 - -
Vimu2g00520 163 CDD CAP_PR-1 32 163 - -
Vimu2g00520 163 SMART SCP_3 28 159 IPR014044 -
Vimu2g00520 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 31 160 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00520 Vimu-Chr2 3010804 3011295 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00520 K13449 - gmx:100805116 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00520 2 3010804 3011295 Vimu2g00520 2 3010804 3011295 ECH
Vimu11g03437 11 55570361 55574613 Vimu2g00520 2 3010804 3011295 PCT