Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03437 ATGGTTTATTTTGCACCATGCATTGCGTTCCTTACAATAATATATATGTTGTGCTCGACCCAAGTCTCAATATCAAAAACAATGAAGACATCAACTCTTGTGTTCATCCTCACCTTAATCTCAATCTGCAGCATTTGCTTCGCACAGAATTCTCCGAAAGATTACCTTGACGAGCACAACAAAGCTCGTAAAGAGGTTGGTGTTAAACCATTGAAATGGAACGAAACCCTTGTGGCCTACGGACAGAAATACGTCAACTCGAAGAAAAAAACCTGCGAATTTGAGCATTCTATGGGGCCTTATGGGGAGAACTTGGCGCAGGGTTATGGTGAATTTAGTGGCGCAGACTCGGTGAAAATGTGGGTGGGAGAGAAGCAATATTATGATGATAAGAACAACAAGTGTGTTAAGGACGAATGCTTGCATTACACTCAGGTGGTTTGGAACACCACAGAAAGTGTTGGATGTGCTAGAGCCAAATGTGACAATAACTGGATGTTTATCATCTGCAACTATTACCCTCCAGGCAATTACATCGGCTCACGACCTTACTAA 555 0.4216 MVYFAPCIAFLTIIYMLCSTQVSISKTMKTSTLVFILTLISICSICFAQNSPKDYLDEHNKARKEVGVKPLKWNETLVAYGQKYVNSKKKTCEFEHSMGPYGENLAQGYGEFSGADSVKMWVGEKQYYDDKNNKCVKDECLHYTQVVWNTTESVGCARAKCDNNWMFIICNYYPPGNYIGSRPY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03437 184 FunFam Putative pathogenesis-related protein 1 49 184 - -
Vimu11g03437 184 ProSitePatterns CRISP family signature 2. 167 178 IPR018244 GO:0005576
Vimu11g03437 184 CDD CAP_PR-1 52 184 - -
Vimu11g03437 184 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 54 181 IPR001283 -
Vimu11g03437 184 Pfam Cysteine-rich secretory protein family 56 172 IPR014044 -
Vimu11g03437 184 SUPERFAMILY PR-1-like 49 184 IPR035940 -
Vimu11g03437 184 Gene3D CAP 49 184 IPR035940 -
Vimu11g03437 184 PRINTS Allergen V5/Tpx-1 family signature 117 130 IPR001283 -
Vimu11g03437 184 PRINTS Allergen V5/Tpx-1 family signature 167 180 IPR001283 -
Vimu11g03437 184 PRINTS Allergen V5/Tpx-1 family signature 71 89 IPR001283 -
Vimu11g03437 184 PRINTS Allergen V5/Tpx-1 family signature 140 156 IPR001283 -
Vimu11g03437 184 SMART SCP_3 50 180 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03437 Vimu-Chr11 55570361 55574613 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03437 K13449 - gmx:100527778 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03437 11 55570361 55574613 Vimu11g03437 11 55570361 55574613 ECH
Vimu11g03437 11 55570361 55574613 Vimu2g00520 2 3010804 3011295 PCT