Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00518 ATGATGTCCCCATGGCATGTGATCGTAGCGATTGTTCTCTTGCTATCTGCAACAAGACTGACCCTGGCTCAGAACACTCCTCAAGACTATCTTGAGGTGCACAACCAGGCTCGAGCGGAGGTTGGCGTTGGTCCACTGTCGTGGAACCACACCCTTCAAGCCTATGCCCAAAGGTATGCGAATGAGAGGATCCCTGACTGCAACCTTGAGCACTCTATGGGACCCTATGGCGAGAATCTTGCAGAAGGGTACGGCGAAATGAAGGGTTCGGATGCTGTGAAATTCTGGCTCACTGAGAAGCCTGACTATGACTACGGTTCCAACCGTTGTGTTCACGATGAGTGCGGGCATTATACTCAGATTGTGTGGCGCAATTCTATTCATCTCGGATGTGCAAGAGCTAAGTGTAACAATGGTTGGATGTTTGTCATCTGCAGCTATTCTCCACCAGGAAACTATGAAGGAGAACGACCTTATTGA 480 0.4958 MMSPWHVIVAIVLLLSATRLTLAQNTPQDYLEVHNQARAEVGVGPLSWNHTLQAYAQRYANERIPDCNLEHSMGPYGENLAEGYGEMKGSDAVKFWLTEKPDYDYGSNRCVHDECGHYTQIVWRNSIHLGCARAKCNNGWMFVICSYSPPGNYEGERPY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00518 159 Pfam Cysteine-rich secretory protein family 31 147 IPR014044 -
Vimu2g00518 159 SUPERFAMILY PR-1-like 18 159 IPR035940 -
Vimu2g00518 159 FunFam Putative pathogenesis-related protein 1 24 159 - -
Vimu2g00518 159 PRINTS Allergen V5/Tpx-1 family signature 92 105 IPR001283 -
Vimu2g00518 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Vimu2g00518 159 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Vimu2g00518 159 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Vimu2g00518 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 28 156 IPR001283 -
Vimu2g00518 159 ProSitePatterns CRISP family signature 2. 142 153 IPR018244 GO:0005576
Vimu2g00518 159 CDD CAP_PR-1 27 159 - -
Vimu2g00518 159 ProSitePatterns CRISP family signature 1. 116 126 IPR018244 GO:0005576
Vimu2g00518 159 Gene3D CAP 24 159 IPR035940 -
Vimu2g00518 159 SMART SCP_3 25 155 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00518 Vimu-Chr2 2990170 2990649 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00518 K13449 - gmx:100527778 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00518 2 2990170 2990649 Vimu2g00518 2 2990170 2990649 ECH
Vimu11g03434 11 55549739 55550170 Vimu2g00518 2 2990170 2990649 PCT