Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03434 ATGTGGAGCATTTGCTTGGCACAAAGCTCCCCAAAAGATTTTCTTGATGAGCACAACAAAGCTCGTAAAGAGGTTGGTAAAAAAAACTGCGACTTTGAGCACTCTATGGGACCTTACGGGGAGAACTTGGCACAGGGTTATGGTGATTTGAGTGGTGTGGACTCGGTGAAATTGTGGGTGGCAGAGAAGGCCTATTATGATGAGAAGAACAACGAGTGTGTTAAGGAAGAATGCTTGCATTACACTCAGGTGGTTTGGAACACCACAGAAAGTGTTGGATGTGCTAGAGCCAAATGTGACAATGATTGGATGTATGTCATCTGCAACTATTACCCTCCAGGCAATTACGTCGAGATGCGACCTTACTAA 369 0.4472 MWSICLAQSSPKDFLDEHNKARKEVGKKNCDFEHSMGPYGENLAQGYGDLSGVDSVKLWVAEKAYYDEKNNECVKEECLHYTQVVWNTTESVGCARAKCDNDWMYVICNYYPPGNYVEMRPY 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03434 122 PRINTS Allergen V5/Tpx-1 family signature 105 118 IPR001283 -
Vimu11g03434 122 PRINTS Allergen V5/Tpx-1 family signature 55 68 IPR001283 -
Vimu11g03434 122 PRINTS Allergen V5/Tpx-1 family signature 78 94 IPR001283 -
Vimu11g03434 122 ProSitePatterns CRISP family signature 2. 105 116 IPR018244 GO:0005576
Vimu11g03434 122 SUPERFAMILY PR-1-like 9 122 IPR035940 -
Vimu11g03434 122 Pfam Cysteine-rich secretory protein family 28 110 IPR014044 -
Vimu11g03434 122 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 28 118 IPR001283 -
Vimu11g03434 122 Gene3D CAP 26 122 IPR035940 -
Vimu11g03434 122 SMART SCP_3 9 118 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03434 Vimu-Chr11 55549739 55550170 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03434 K13449 - gmx:100527778 161.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03434 11 55549739 55550170 Vimu11g03434 11 55549739 55550170 ECH
Vimu11g03434 11 55549739 55550170 Vimu2g00518 2 2990170 2990649 PCT