Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00516 ATGGCGGTGGAATACAAGTGCTGTGAAACTCAGTTTTTCATGCGGTTACTGATAATTGTGCTGCTTGTGTTGTTTGCTGGATTGATGTCAGGCCTCACTTTAGGACTCATGTCCTTGAGTCTTGTTGATCTCGAGGTTCTTGCCAAGTCTGGCACCCCTCAAGATCGCAAACATGCCGCGAAGATATTGCCTGTTGTCAGAAATCAACATTTGCTGCTTTGCACCCTTCTAATTTGCAACGCTGCAGCTATGGAGGCACTTCCTATCTTTCTTGATAGTCTTGTTGTTGCATGGGGCGCTGTTCTGATTTCAGTAACATTAATTCTCCTGTTTGGTGAGATTATACCACAATCAATTTGTTCTCGGTATGGTTTAGCAATTGGAGCAACAGTGGCTCCAGTTGTCCGTGTCCTTGTGTGGATATGTTTTCCTGTTGCCTATCCAATTAGCAAGTTGTTGGACTATTTGCTGGGGTATCGACATGAAGCACTTTTCCGTAGGGCTGAGTTGAAAACGCTTGTAAATCTGCATGGAAATGAGGCTGGAAAAGGTGGGGAACTGACCCATGATGAAACAACAATCATTGCTGGAGCACTTGAACTCACTGAGAAGACAGCCAGTGACGCCATGACTCCCATAACTGAAATATTTTCCATTGATATTAATTCAAAGCTTGATAGGGAATTGATGAATCTAATATTGGAGAAAGGGCATAGCAGAGTCCCTGTCTACTACGAGGAGACTACAAACATAATTGGACTTATCTTGGTCAAGAATTTACTGAGAATTGACCCAGAAGAAGGAATACCGGTGAAAAGTGTGACCATACGGAGAATACCAAGGGTTCCAGAAACGATGCCACTGTATGATATTTTGAACGAGTTCCAGAAGGGTCATAGCCACATGGCTGTTGTTATCAGAAACACTGACAAGACAGGTCAACACTCGTCAAACAATAATGGCAATGTGAGAGATGTGAAGGTAGATATTGATGGCCAGAAGACACCCCAAGAGAGTAATAATCTGTTGAAAAGCAAAAGGTCACTCCAAAAGTGGAAGAGCTTTCCAAACTCGAATAATTCGAACAGGGGAAGTTACAGGAGCAGAAAATGGTCAAAAAATATGTACTCAGATATCTTGGAAATAGATGGAAACACACTTCCAACGCCACCAGAAAAAGAAGAAGCTGTTGGAATTATCACCATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAGACCGATCATCACTTTGAAGACTCGTGA 1278 0.4249 MAVEYKCCETQFFMRLLIIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDSLVVAWGAVLISVTLILLFGEIIPQSICSRYGLAIGATVAPVVRVLVWICFPVAYPISKLLDYLLGYRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPITEIFSIDINSKLDRELMNLILEKGHSRVPVYYEETTNIIGLILVKNLLRIDPEEGIPVKSVTIRRIPRVPETMPLYDILNEFQKGHSHMAVVIRNTDKTGQHSSNNNGNVRDVKVDIDGQKTPQESNNLLKSKRSLQKWKSFPNSNNSNRGSYRSRKWSKNMYSDILEIDGNTLPTPPEKEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00516 425 MobiDBLite consensus disorder prediction 333 368 - -
Vimu2g00516 425 MobiDBLite consensus disorder prediction 309 324 - -
Vimu2g00516 425 MobiDBLite consensus disorder prediction 309 368 - -
Vimu2g00516 425 Gene3D - 377 417 IPR046342 -
Vimu2g00516 425 Pfam CBS domain 227 263 IPR000644 -
Vimu2g00516 425 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Vimu2g00516 425 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Vimu2g00516 425 Pfam Cyclin M transmembrane N-terminal domain 17 190 IPR002550 -
Vimu2g00516 425 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Vimu2g00516 425 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Vimu2g00516 425 Gene3D - 191 324 IPR046342 -
Vimu2g00516 425 PANTHER METAL TRANSPORTER CNNM 3 422 IPR045095 GO:0010960
Vimu2g00516 425 FunFam DUF21 domain-containing protein 189 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00516 Vimu-Chr2 2972248 2977056 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00516 K16302 - gmx:100795897 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00516 2 2972248 2977056 Vimu2g00516 2 2972248 2977056 ECH
Vimu11g03428 11 55479567 55485759 Vimu2g00516 2 2972248 2977056 PCT