Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03428 ATGGCGGTGGAGTACACATGCTGCACATCGCAGTTCTTCGTTCACATACTCGTGATCGTGCTGCTGGTGCTGTTCGCGGGCCTCATGTCGGGCCTCACGTTGGGCCTCATGTCGCTCAGCCTTGTTGATCTGGAGGTCCTCGCTAAGTCTGGTACTCCTCAAGATCGTAAGCACGCTGCGAAGATATTACCAGTTGTCAAAAACCAACATTTATTGCTTTGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGACACTTCCTATTTTTCTCGATAGTCTTGTTACTGCATGGGGTGCTATCCTTATTTCGGTGACATTAATTCTTTTGTTCGGTGAGATTATACCCCAATCAGTATGTTCTCGGTATGGTTTGGCTATTGGTGCAGCAGTGGCTCCCTTTGTTCGGGTGCTTGTATGTGTATGCTTTCCGGTTGCCTTTCCAATTAGTAAGTTGTTGGACTTTTTGCTGGGCCATAGACATGAGGCCTTGTTCCGTAGAGCTGAGTTGAAGACACTTGTAAATTTGCATGGTAATGAGGCTGGAAAAGGTGGGGAACTGACACATGATGAAACAACTATCATTGCTGGGGCACTTGAACTCAGCGAGAAGACAGCTAGTGATGCCATGACTCCTATAGCTGAAACATTTGCTGTTGATATTAATTCGAAGCTTGATAGGGAACTGATGAATGAAATATTGGAGAAAGGGCATAGCAGAGTCCCAGTCTTCTATGAGCAGCCCACAAACATTATAGGACTTATACTGGTGAAGAATTTATTGACTGTTCATCCAGAAGATGAAGCATCCGTGAAGAGTGTAACTATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTTTAAATGAATTCCAGAAGGGCCATAGCCACATGGCAGTTGTTGTGAGACGGTGTGACAAGACGAAGCAGCAATCCTCCCAAAATAATGCAAACGACTCGGTGAGAGATGTGAAGGTGGATATTGATGGTGAAAAGCCTCCCAAAGAGAAACCTTTGAAATCCAAGGTGCCACTCCATAAGTGGAAAAGCTTCCCAAATACAAACAAGTCAAATGGGGTTGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCAGATATTTTGGAAATAGATGGAAGTCCCCTTCCTAAGCTCCCTGAAGAAGAAGAAGCTGTTGGAATTATTACAATGGAAGATGTCATTGAAGAGCTTCTACAGGAGGAGATCTTTGATGAAACAGATCATCATTTTGAAGACTCATGA 1278 0.4397 MAVEYTCCTSQFFVHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAAKILPVVKNQHLLLCTLLICNAAAMETLPIFLDSLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGAAVAPFVRVLVCVCFPVAFPISKLLDFLLGHRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPIAETFAVDINSKLDRELMNEILEKGHSRVPVFYEQPTNIIGLILVKNLLTVHPEDEASVKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKTKQQSSQNNANDSVRDVKVDIDGEKPPKEKPLKSKVPLHKWKSFPNTNKSNGVGSRSRKWSKNMYSDILEIDGSPLPKLPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03428 425 Pfam Cyclin M transmembrane N-terminal domain 17 190 IPR002550 -
Vimu11g03428 425 PANTHER METAL TRANSPORTER CNNM 3 422 IPR045095 GO:0010960
Vimu11g03428 425 MobiDBLite consensus disorder prediction 326 344 - -
Vimu11g03428 425 MobiDBLite consensus disorder prediction 310 344 - -
Vimu11g03428 425 Gene3D - 373 417 IPR046342 -
Vimu11g03428 425 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Vimu11g03428 425 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Vimu11g03428 425 Gene3D - 191 325 IPR046342 -
Vimu11g03428 425 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Vimu11g03428 425 FunFam DUF21 domain-containing protein 189 324 - -
Vimu11g03428 425 MobiDBLite consensus disorder prediction 310 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03428 Vimu-Chr11 55479567 55485759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03428 K16302 - gmx:100801937 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03428 11 55479567 55485759 Vimu11g03428 11 55479567 55485759 ECH
Vimu11g03428 11 55479567 55485759 Vimu2g00516 2 2972248 2977056 PCT