Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00513 CCTAGTTCCACTGATCTAACCGAGATGGATTTTGAATTTATTTTGGGCGGAATTACAGCTTCTACTATGGTTCTTCTGTTTGTTCTATTCAATTCTGCATCAAAGAAGGAGGCCACATGTTTAGTACATGCAGAAAATTATGGTAGCAGTATGATAACAACAACAGCAGAAAATGGAAACCAACATCAAGAAATTTCACCAACCTCCGACATCATCATTGTCGGTGCTGGGGTTGCTGGTTCAGCCCTTGCTTACACACTTGGCAAGGAAGGACGGCGAGTGCATGTTATTGAAAGGGACTTGAGTGAACCAGACAGGATTGTGGGAGAATTGCTACAACCTGGAGGTTATCTCAAGCTAATTGAGTTGGATCTCCAAGATTGTGTGGGTGAGATTGATGCTCAGCAAGTCTTTGGCTATGCTCTTTACAAGGATGGGGAAAATACCAAACTTTCTTATCCCTTGGAAAAGTTTGACTCTGATGTTTCCGGAAGAAGCTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAGAAGGCTTCAACTCTTCCAAATGTAAAATTAGAACAAGGGACTGTCACATCTCTGCTAGAAGAAAATGGAATCATCAAAGGGGTAAACTACAAAACCAGAAATGGACAAGACCTCACAGCCAAGGCTCCACTCACAATAGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAACCCAAAGGTCGATGTACCATCTCATTTTGTTGGTCTGGTCCTAGAGAACTGCAATCTTCCATATGAAAACCACGGGCACGTTATCTTGGGTGATCCTTCTCCCATTTTGTTTTATCCCATAAGTAGCACTGAGATTCGGTGTCTGGTTGATGTGCCTGCTGGCAAAAAATTACCTTCCCTTGGCAATGGGGACATGGCTCGTTATTTGAAAACAGTTGTAGCTCCACAGGTTCCCCCAGAGTTGCATGCTTCTTTTATAGCAGCAGTTGACAAAGGAAACATAAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCCGTATCGCACACCTGGTGCCCTTCTCATGGGAGATGCCTTCAACATGCGTCACCCTTTAACTGGAGGGGGAATGACCGTGGCTTTGTCTGACATTGTTTTGCTGAGGAACCTTCTTAGACCTCTCCATGATCTTCATGATGCTAATGCTCTTTGCAAATATCTTGAATCATTCTACACCCTACGCAAGCCAATGGCATCTACAATAAACACTTTAGCTGGGGCATTATACAAGGTGTTTTGTGCATCACCTGATCCAGCTAGTAAGGAAATGCGCCAGGCTTGTTTTGATTATTTAAGCCTTGGAGGTGTTTTCTCAGATGGACCAATATCTCTACTCTCAGGTCTAAATCCTCGTCCATTAAGCTTGGTTCTTCATTTCTTTGCTGTGGCTATATACGGTGTTGGTCGCTTACTCATACCATTTCCTTCTCCAAAACGCATGTGGATTGGAGCTAGAATTATATCCGTGAGTACTTTTTGCATTTCTTAA 1524 0.4318 PSSTDLTEMDFEFILGGITASTMVLLFVLFNSASKKEATCLVHAENYGSSMITTTAENGNQHQEISPTSDIIIVGAGVAGSALAYTLGKEGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELDLQDCVGEIDAQQVFGYALYKDGENTKLSYPLEKFDSDVSGRSFHNGRFIQRMREKASTLPNVKLEQGTVTSLLEENGIIKGVNYKTRNGQDLTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYENHGHVILGDPSPILFYPISSTEIRCLVDVPAGKKLPSLGNGDMARYLKTVVAPQVPPELHASFIAAVDKGNIRSMPNRSMPASPYRTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRNLLRPLHDLHDANALCKYLESFYTLRKPMASTINTLAGALYKVFCASPDPASKEMRQACFDYLSLGGVFSDGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARIISVSTFCIS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00513 507 Gene3D - 62 449 IPR036188 -
Vimu2g00513 507 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 363 379 - -
Vimu2g00513 507 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 219 234 - -
Vimu2g00513 507 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 348 363 - -
Vimu2g00513 507 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 70 92 - -
Vimu2g00513 507 Pfam Squalene epoxidase 219 493 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vimu2g00513 507 Pfam NAD(P)-binding Rossmann-like domain 73 99 - -
Vimu2g00513 507 FunFam Squalene monooxygenase 2 63 444 - -
Vimu2g00513 507 SUPERFAMILY FAD/NAD(P)-binding domain 70 445 IPR036188 -
Vimu2g00513 507 PANTHER SQUALENE MONOOXYGENASE 28 505 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00513 Vimu-Chr2 2953177 2956068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00513 53 500 Miscellaneous Gene Families AT1G58440 77.009 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00513 K00511 - gmx:100795027 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00513 2 2953177 2956068 Vimu2g00513 2 2953177 2956068 ECH
Vimu11g03422 11 55436266 55438973 Vimu2g00513 2 2953177 2956068 PCT