Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03422 ATGGATTATCAGTATCTTCTAGGAGGGATTGTGGCTTGTAGCTTCGCATTTTTCTATTTTGTGTATAGTTTTGGAGCAAGAAAGGTCACAGATTCAAGTTCGATTCATGTAGAAAGTAATGAGTGCGAGAAGAAATCATCAGAAAATGGAACATTTTCACACCAGGCTGCAGAAAGTGCAGACATAATCATTGTGGGTGCAGGCGTTGCCGGTGCTGCTCTTGCTTACACGCTTGGAAAGGATGGTCGCCGAGTACATGTGATTGAAAGGGATTTGAGTGAGCCTGACAGGATTGTGGGTGAATTGCTACAACCTGGGGGATATCTGAAGTTAATTGAGCTGGGTCTTCAAGATTGTGTAAGTGAAATTGATGCTCAGCAAGTCTTTGGGTATGCTCTGTATAAGGATGGCAAAAATACCAAGCTTTCTTATCCCTTGGAAAAGTTTAGCTCTGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGAGAGAAAAGGCCTCATCTCTGCCTAATGTAAATTTAGAACAAGGAACTGTGACATCTCTAATTGAAGAAAAAGGAACCATCATCGGGGTGCAGTACAAAACCAAAAGTGGACAAGAGTTCACAGCCAAGGCTCCCCTCACAATAGTATGTGATGGATGTTTTTCCAACCTTAGGCGTTCTCTTTGCAATCCTAAGGTTGACGTACCCTCTCATTTTGTTGGTCTGGTCTTGGAGAATTGCAATCTTCCATATGCAAATCATGGACACGTGATCTTAGGTGATCCTTCACCCATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAGTTACCTTCCCTTGGCAATGGTGAAATGGCCAGTTATTTAAAAACTGTGGTAGCTCCTCAGGTAAACCACATACAAGTGTTTCCAAATGATGAACATCCCAACAAATTGAAGGTTCCTCCAGAGCTGTATACTTCATTTATAGCAGCAGTTGACAAAGGAAGCATAAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTCATCCCACACCTGGTGCCCTTCTTATGGGAGATGCCTTCAATATGCGTCACCCTTTAACAGGAGGAGGAATGACAGTGGCTTTATCTGACATTGCTGTGCTAAGGGATCTACTTAAACCCCTTAGGAATCTGCATGATGCTTCTGCACTTTGCAGATACCTTGAGTCATTCTACACCCTACGCAAGCCAGTGGCATCCACAATAAACACACTAGCTGGAGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTTGATTACTTGAGCCTTGGTGGTGTTTTCTCTAATGGACCAATATCTCTGCTCTCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTGCATTTCTTTGCGGTTGCCATATATGGTGTTGGCCGCTTGCTCATACCATTTCCTTCTCCCAAACGGTTGTGGATTGGAGCTAGATTGATTTCAGGTGCATCAGGGATAATATTCCCCATTATCAAGGCTGAAGGAGTGAGACAAATGTTTTTCCCAGCAACTGTGCCTGCATATTACAGAGCCCCTCCTGTTTGTTGA 1626 0.4354 MDYQYLLGGIVACSFAFFYFVYSFGARKVTDSSSIHVESNECEKKSSENGTFSHQAAESADIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLQDCVSEIDAQQVFGYALYKDGKNTKLSYPLEKFSSDVSGRSFHNGRFIQRMREKASSLPNVNLEQGTVTSLIEEKGTIIGVQYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGEMASYLKTVVAPQVNHIQVFPNDEHPNKLKVPPELYTSFIAAVDKGSIRTMPNRSMPASPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIAVLRDLLKPLRNLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRLWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRAPPVC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03422 541 Pfam Squalene epoxidase 210 500 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vimu11g03422 541 Gene3D - 53 457 IPR036188 -
Vimu11g03422 541 SUPERFAMILY FAD/NAD(P)-binding domain 60 452 IPR036188 -
Vimu11g03422 541 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Vimu11g03422 541 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 370 386 - -
Vimu11g03422 541 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Vimu11g03422 541 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 370 - -
Vimu11g03422 541 PANTHER SQUALENE MONOOXYGENASE 12 539 IPR040125 GO:0004506|GO:0016126
Vimu11g03422 541 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03422 Vimu-Chr11 55436266 55438973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03422 46 540 Miscellaneous Gene Families AT1G58440 76.815 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03422 K00511 - gmx:100800329 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03422 11 55436266 55438973 Vimu11g03422 11 55436266 55438973 ECH
Vimu11g03422 11 55436266 55438973 Vimu2g00513 2 2953177 2956068 PCT