Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00492 ATGGCTGCCGTGCTTCGCTCTCTCCGCCGCCGTGATGTCGCCTCCGCCACCTTCTCTGCTTATCGCTCGTTGACGGGAAGCACTAAGCCTGCATATGTAGCTCAGAAGTGGTCTTGTTTGGCTCGACCATTCAGTTCAAGACCTGCTGGAAATGATGTCATTGGTATTGATTTAGGTACAACTAATTCATGTGTTTCCGTCATGGAAGGAAAGAACCCCAAAGTTATTGAGAATTCTGAGGGTGCTAGAACAACACCGTCTGTGGTTGCTTTTAACCAGAAAGGGGAGCTGCTTGTTGGTACCCCAGCCAAACGTCAAGCTGTAACTAACCCGACAAACACTGTCTTTGGTACCAAGCGTTTGATCGGTAGACGATTTGATGATCCTCAAACACAAAAGGAGATGAAAATGGTTCCGTTCAAGATTGTTAAGGCTCCAAATGGTGATGCGTGGGTTGAGGCTAATGGACAACAGTATTCTCCAAGCCAAATTGGTGCTTTTGTTCTCACCAAGATGAAGGAAACTGCAGAAGCTTATCTTGGAAAGTCAGTTACGAAGGCGGTAATTACTGTACCGGCTTATTTCAATGATGCTCAGAGGCAGGCAACAAAAGATGCTGGTAGAATTGCAGGTCTTGATGTGCAGAGAATTATTAATGAACCCACTGCTGCTGCACTTTCATACGGAATGAACAACAAGGAGGGTCTCATTGCTGTTTTTGACCTTGGAGGTGGAACATTTGATGTATCCATCTTAGAAATTTCGAATGGCGTGTTTGAGGTGAAAGCAACAAATGGTGACACTTTCTTGGGAGGAGAGGATTTTGACAATGCCTTGTTGGATTTTCTGGTGAACGAATTTAAAAGAACCGAGAGTATTGACCTTTCAAAGGACAGGCTTGCACTGCAGAGGCTTCGTGAAGCTGCTGAGAAAGCCAAGATAGAGCTGTCTTCAACATCTCAAACTGAAATCAACCTGCCTTTCATTACTGCTGATGCTTCTGGTGCTAAGCATCTGAACATAACATTGACTAGATCTAAGTTTGAGGCCTTGGTAAATAACTTGATCGAAAGGACCAAGGCACCATGCAAAAGCTGTTTGAAGGATGCTAACATCTCTGTCAAGGATGTTGACGAGGTTCTTCTTGTCGGAGGGATGACTAGGGTACCCAAAGTCCAAGAGGTGGTTTCAGAGATATTTGGAAAGTCTCCCAGCAAAGGTGTAAATCCTGATGAGGCAGTTGCCATGGGGGCGGCAATCCAAGGTGGTATCCTACGTGGAGATGTTAAAGAGCTACTGCTCCTGGATGTAACTCCGCTTTCTCTGGGTATTGAGACTTTGGGAGGTATCTTTACTAGGTTGATCAACCGCAACACAACTATTCCCACTAAGAAGAGTCAGGTCTTTTCAACTGCAGCCGACAATCAAACTCAGGTCGGTATCAAGGTGCTACAAGGTGAGCGGGAAATGGCTGCAGACAACAAAATGCTTGGAGAATTTGACCTTGTTGGTATTCCTCCTGCTCCCAGAGGTCTTCCTCAGATTGAGGTGACGTTTGACATTGATGCCAATGGTATTGTTACCGTCTCTGCCAAAGACAAGTCTACTGGGAAAGAACAACAAATCACCATTCGGTCATCTGGCGGACTCTCGGAAGATGAGATTGAAAAGATGGTCAAAGAAGCAGAATTGCACGCTCAGAAAGACCAAGAAAGAAAGGCTCTTATTGACGTTAGAAATAGTGCTGACACTACTATATATAGCATTGAGAAGAGTTTAGGGGAATACAGGGAGAAGATTCCCAGTGAAGTGGCCAAAGAAATTGAGGATGCAGTTTCGGATTTGAGAAAGGCGATATCTGGGGATAATGTTGATGAAATTAAGTCTAAGCTTGACGCTGCAAACAAAGCTGTATCCAAAATTGGACAGCACATGTCAGGTGATTCTAGTGGTGGTTCCTCAGCCGGTGGTTCACAGGGTGGGGACCAGGCTCCAGAGGCAGAGTATGAGGAGGTCAAGAAGTGA 2025 0.4533 MAAVLRSLRRRDVASATFSAYRSLTGSTKPAYVAQKWSCLARPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVTKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNNLIERTKAPCKSCLKDANISVKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKALIDVRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVSDLRKAISGDNVDEIKSKLDAANKAVSKIGQHMSGDSSGGSSAGGSQGGDQAPEAEYEEVKK 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00492 674 Gene3D - 229 409 - -
Vimu2g00492 674 FunFam Molecular chaperone DnaK 272 359 - -
Vimu2g00492 674 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 425 549 IPR029047 -
Vimu2g00492 674 ProSitePatterns Heat shock hsp70 proteins family signature 2. 239 252 IPR018181 -
Vimu2g00492 674 NCBIfam molecular chaperone DnaK 53 645 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vimu2g00492 674 ProSitePatterns Heat shock hsp70 proteins family signature 1. 56 63 IPR018181 -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 52 65 - -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 103 111 - -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 187 207 - -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 377 393 - -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 408 428 - -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 245 255 - -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 512 528 - -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 431 450 - -
Vimu2g00492 674 PRINTS 70kDa heat shock protein signature 80 92 - -
Vimu2g00492 674 Hamap Chaperone protein DnaK [dnaK]. 50 672 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vimu2g00492 674 FunFam Molecular chaperone DnaK 550 650 - -
Vimu2g00492 674 FunFam Molecular chaperone DnaK 54 235 - -
Vimu2g00492 674 Gene3D - 54 422 - -
Vimu2g00492 674 PANTHER HEAT SHOCK PROTEIN 70KDA 53 610 IPR013126 GO:0005524|GO:0140662
Vimu2g00492 674 Coils Coil 295 322 - -
Vimu2g00492 674 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 427 583 IPR029047 -
Vimu2g00492 674 FunFam Chaperone protein HscA homolog 236 293 - -
Vimu2g00492 674 CDD HSPA9-like_NBD 50 425 - -
Vimu2g00492 674 ProSitePatterns Heat shock hsp70 proteins family signature 3. 380 394 IPR018181 -
Vimu2g00492 674 Gene3D Actin; Chain A, domain 4 272 359 - -
Vimu2g00492 674 MobiDBLite consensus disorder prediction 637 674 - -
Vimu2g00492 674 MobiDBLite consensus disorder prediction 642 660 - -
Vimu2g00492 674 SUPERFAMILY Actin-like ATPase domain 53 233 IPR043129 -
Vimu2g00492 674 Pfam Hsp70 protein 53 645 IPR013126 GO:0005524|GO:0140662
Vimu2g00492 674 FunFam Heat shock protein 9 116 167 - -
Vimu2g00492 674 FunFam Chaperone protein DnaK HSP70 421 604 - -
Vimu2g00492 674 Gene3D - 550 648 IPR029048 -
Vimu2g00492 674 SUPERFAMILY Actin-like ATPase domain 234 425 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00492 Vimu-Chr2 2794883 2798143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00492 53 595 Miscellaneous Gene Families AT5G42020 54.480 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00492 K04043 - gmx:100804559 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00492 2 2794883 2798143 Vimu2g00492 2 2794883 2798143 ECH
Vimu11g03404 11 55099242 55103280 Vimu2g00492 2 2794883 2798143 PCT