Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03404 ATGGTGAACATTATTCAGAAGTTGACAAGTGGCACAAAGACATCGTATCTAGGTCACAAGTGGGCTAGTTTGTCTCGACCATTCAGTTCAAAGCCTGCTGGTAATGATGTCATTGGAATTGATCTGGGCACTACCAATTCATGTGTTGCTGTTATGGAGGGAAAGGCAAGATTTTCTCTCTTAATCTGTTTGGACATGTTTTCAGTGAATCCTAAAGTCATTGAGAATTCTGAAGGAGCTCGAACAACACCATCAGTAGTTGCCTTTAACCAGAAAGGGGAGCTTCTTGTTGGTACACCTGCCAAGCGTCAGGCTGTGACTAACCCTACAAACACTCTTTTTGGAACCAAGCGAATGATTGGTAGGCGGTTTGATGATCCTCAAACTCAGAAGGAGATGAAGATGGTACCATTCAAGATTGTTAGGGCACCCAATGGAGATGCTTGGGTTGAAGCCAATGGACAGCAGTACTCTCCCAGCCAAATTGGTGCTTTTGTTCTCACCAAGATGAAGGAAACTGCTGAGTCGTATCTTGGAAAGTCAGTTTCAAAAGCTGTAATCACTGTACCAGCTTACTTCAATGATGCACAAAGGCAGGCAACAAAAGATGCTGGCAGAATTGCTGGTCTTGATGTCCAGAGAATCATCAACGAGCCCACTGCTGCTGCACTTTCATATGGGATGAACAACAAGGAGGGTCTCATTGCAGTTTTTGATCTTGGAGGTGGAACTTTTGATGTGTCCATATTAGAGATTTCTAATGGTGTTTTTGAGGTGAAAGCAACAAACGGTGACACCTTCTTGGGAGGAGAGGATTTTGATAATGCTTTATTGGACTTTCTAGTGAACGAATTCAAAAAATCTGAGAGTATTGACCTTTCAAAGGATAGGCTTGCCTTGCAGAGGCTTCGGGAAGCTGCTGAGAAAGCAAAAATAGAACTTTCTTCAACATCTCAAACAGAAATCAACCTTCCTTTCATCACTGCCGATGCATCTGGTGCAAAGCATTTGAATATCACATTGACTAGATCCAAGTTTGAGGCTTTAGTAAACCACTTGATTGAAAGGACAAAGGCACCGTGTAAGAGCTGCTTGAAGGATGCTAACGTATCTATCAAGGATGTTGATGAGGTTCTTCTTGTTGGAGGGATGACCCGTGTGCCTAAAGTCCAGGATGTGGTTTCGCAGATCTTTGGAAAGAGTCCTAGCAAAGGAGTAAATCCTGATGAAGCAGTTGCCATGGGAGCTGCTATTCAAGGCGGTATATTACGCGGAGATGTTAAAGAGCTATTACTCCTCGACGTGACTCCTCTTTCTCTGGGTATTGAGACTCTGGGTGGTATATTTACCAGATTGATCAACCGTAACACCACAATTCCTACGAAAAAAAGCCAGGTGTTTTCAACAGCAGCTGACAATCAGACTCAGGTTGGTATCAAAGTTCTACAAGGTGAGCGAGAAATGGCTTCAGACAACAAATCGCTTGGAGAATTTGAGCTTGTTGGCATTCCTCCAGCCCCAAGAGGTATGCCTCAGATTGAAGTCACATTTGACATTGACGCCAACGGTATTGTTACTGTCTCTGCCAAAGACAAATCCACTGGTAAAGAACAGCAAATCACCATCCGATCATCTGGAGGACTCTCAGAAGATGAGATCGATAAGATGGTCAAGGAAGCAGAGTTGCATGCTCAGAAAGACCAAGAAAGGAAGACTCTCATTGACATTAGAAACAGTGCAGATACAACCATCTACAGCATTGAGAAGAGTTTAGGTGAATATAGAGAGAAGATTCCAAGTGAAGTGGCCAAAGAGATTGAAGATGCAGTATCAGATTTGAGAACGGCAATGGCAGGGGAGAATGCTGATGAAATTAAGGCAAAGCTTGATGCAGCGAACAAAGCTGTTTCCAAGATTGGAGAGCACATGTCAGGTGGTTCTAGTGGGGGTTCCTCCACTGGGGGTTCCCAGGGTGGTGGTGACCAGGCTCCCGAGGCGGAGTATGAAGAAGTCAAGAATATATACTTCTCAGAGCAATCTCTGAGGATCTCAGGACTAGCAAGGATCTCCTTTAGGAAGAATAAAAATAAACCCAGAATTTTGAGAGATGAAGAAAAGAGAAAGAAAGATATTAATAGAAAGGAGAGTGAGAATGAGAATGAGAGAACTGATGGAAAAAGGAGTGGAGGAGGTGTTTATCAATCACAATACATCCCCACAATCCTTGCTGTTATCGCTGTGATGCGCTTACTAGGCCATGCGCGTGCCCGATCATGCCAAGATCTCATGCAAGCGGCCCCACTTGACACTCATATAGGTGATTTCATCAAGTGTATGCTGCAAATCATACACCACCCATAA 2361 0.4375 MVNIIQKLTSGTKTSYLGHKWASLSRPFSSKPAGNDVIGIDLGTTNSCVAVMEGKARFSLLICLDMFSVNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRMIGRRFDDPQTQKEMKMVPFKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKKSESIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQDVVSQIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIDKMVKEAELHAQKDQERKTLIDIRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVSDLRTAMAGENADEIKAKLDAANKAVSKIGEHMSGGSSGGSSTGGSQGGGDQAPEAEYEEVKNIYFSEQSLRISGLARISFRKNKNKPRILRDEEKRKKDINRKESENENERTDGKRSGGGVYQSQYIPTILAVIAVMRLLGHARARSCQDLMQAAPLDTHIGDFIKCMLQIIHHP 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03404 786 NCBIfam molecular chaperone DnaK 37 643 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vimu11g03404 786 Hamap Chaperone protein DnaK [dnaK]. 34 671 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vimu11g03404 786 FunFam Molecular chaperone DnaK 548 648 - -
Vimu11g03404 786 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 425 581 IPR029047 -
Vimu11g03404 786 Gene3D - 227 407 - -
Vimu11g03404 786 FunFam Chaperone protein DnaK HSP70 419 602 - -
Vimu11g03404 786 Pfam Hsp70 protein 37 643 IPR013126 GO:0005524|GO:0140662
Vimu11g03404 786 CDD HSPA9-like_NBD 34 423 - -
Vimu11g03404 786 Gene3D - 38 420 - -
Vimu11g03404 786 MobiDBLite consensus disorder prediction 640 665 - -
Vimu11g03404 786 SUPERFAMILY Actin-like ATPase domain 37 231 IPR043129 -
Vimu11g03404 786 ProSitePatterns Heat shock hsp70 proteins family signature 1. 40 47 IPR018181 -
Vimu11g03404 786 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 423 547 IPR029047 -
Vimu11g03404 786 FunFam Molecular chaperone DnaK 270 357 - -
Vimu11g03404 786 PANTHER HEAT SHOCK PROTEIN 70KDA 37 608 IPR013126 GO:0005524|GO:0140662
Vimu11g03404 786 Coils Coil 293 320 - -
Vimu11g03404 786 Gene3D Actin; Chain A, domain 4 270 357 - -
Vimu11g03404 786 PRINTS 70kDa heat shock protein signature 36 49 - -
Vimu11g03404 786 PRINTS 70kDa heat shock protein signature 185 205 - -
Vimu11g03404 786 PRINTS 70kDa heat shock protein signature 429 448 - -
Vimu11g03404 786 PRINTS 70kDa heat shock protein signature 375 391 - -
Vimu11g03404 786 PRINTS 70kDa heat shock protein signature 243 253 - -
Vimu11g03404 786 PRINTS 70kDa heat shock protein signature 510 526 - -
Vimu11g03404 786 PRINTS 70kDa heat shock protein signature 101 109 - -
Vimu11g03404 786 PRINTS 70kDa heat shock protein signature 406 426 - -
Vimu11g03404 786 SUPERFAMILY Actin-like ATPase domain 232 423 IPR043129 -
Vimu11g03404 786 Coils Coil 701 721 - -
Vimu11g03404 786 Gene3D - 548 645 IPR029048 -
Vimu11g03404 786 ProSitePatterns Heat shock hsp70 proteins family signature 2. 237 250 IPR018181 -
Vimu11g03404 786 MobiDBLite consensus disorder prediction 644 659 - -
Vimu11g03404 786 FunFam Molecular chaperone DnaK 38 233 - -
Vimu11g03404 786 FunFam Heat shock protein 9 114 165 - -
Vimu11g03404 786 FunFam Chaperone protein HscA homolog 234 292 - -
Vimu11g03404 786 ProSitePatterns Heat shock hsp70 proteins family signature 3. 378 392 IPR018181 -
Vimu11g03404 786 MobiDBLite consensus disorder prediction 700 726 - -
Vimu11g03404 786 MobiDBLite consensus disorder prediction 700 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03404 Vimu-Chr11 55099242 55103280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03404 37 649 Miscellaneous Gene Families AT5G42020 49.452 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03404 K04043 - gmx:100811003 1189.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03404 11 55099242 55103280 Vimu2g00492 2 2794883 2798143 PCT