Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00434 ATGAATTCTAAATTTCCCTCAAGCGATAATGCTGTTAGAATTAAAGCTGGAGGAGGAGACCTACTTTCCTATCCAAAGAGCAATGACATTGTGATAGGCAAAAGTCTGGTTGGAGATGAATCTGTTCGAATTGATGTACAATATAATGGAACACCAACTGTAGACACCGTGATAACAAGCAATGTTTTCTCTGTTGATGGTGATGAATTCGATCTGGACAGCCCAACAGCAGGTTTTGCTTCCATCCCCGAGGCCATTGAAGACATTCGGCAGGGAAAGATGGTAGTGGTCGTCGATGACGAAGATCGAGAAAATGAAGGAGACTTGATAATGGCAGCACAGTTGGCAACACCCGAGGCAATGGCCTTTATTGTGAAACATGGAACTGGGATAGTTTGTGTAAGCATGGAAGAGGAAGATTTAGATAGATTGGAACTTCCTTTGATGGTAAACAGTAAGGATAATGACGAGAAGCTTCGTACGGCATTCACTGTGACAGTGGATGCTAAACATGGTACCAGCACCGGTGTGTCAGCTCAAGATAGGGCAACAACAGTCTTAGCCCTTGCATCTAGAGATTCTACTCCAGGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGGGAAGGTGGTGTCTTGAAGAGAGCTGGACATACAGAAGCTTCGGTTGATCTTGCTGTACTTGCTGGCATGGATCCAGTGGCAGTTCTATGTGAGATTGTAGATGACGATGGGTCCATGGCCAGACTGCCAAAACTTCGCCAGTTTGCAGAGCGTGAAAATTTGAAAGTCGTATCCATTGCTGACTTAATAAGCGATTATAACACTTCCCATTATGGCAGATATAGAAGAAAAAGGGATAAGCTGGTCGATCGCGCTTCTGCAGCACGGATACCTACAATGTGGGGACCATTCACAGCTTACTGTTACAGGTCCCTTTTGGACGGAATTGAGCATATTGCAATGGTTAAGGGTGAGATTGGAGATGGAGAAGACGTCCTTGTGAGGGTACACTCCGAGTGTCTAACCGGAGACATATTTGGATCTGCGAGATGCGACTGCGGAAATCAACTTGCACTCTCAATGCAGCAGATTGAAGCTGCTGGTAGAGGTGTGCTGGTATATCTCCGTGGACACGAAGGACGTGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGATGATGGACGTGATACAGTAGAAGCCAACGAGGAGTTAGGATTGCCTGTTGACTCCAGGGAATACGGCATTGGCGCTCAGATATTAAGAGACTTGGGTGTTAGATCTATGAAGCTGATGACCAACAATCCAGCAAAATATGTTGGGCTCAAAGGTTACGGTTTGACAGTTTCGGGTAGGATCCCAATATTAAGTCTCATTACTTCAGAGAACAAGAGATATTTAGAGACCAAACGTATGAAAATGGGTCACATATATGGCATAGAAAGTGGTAACAAGGTTGATGACTCTAGTACTGTTACTGCCCTATAG 1509 0.4486 MNSKFPSSDNAVRIKAGGGDLLSYPKSNDIVIGKSLVGDESVRIDVQYNGTPTVDTVITSNVFSVDGDEFDLDSPTAGFASIPEAIEDIRQGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMEEEDLDRLELPLMVNSKDNDEKLRTAFTVTVDAKHGTSTGVSAQDRATTVLALASRDSTPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGMDPVAVLCEIVDDDGSMARLPKLRQFAERENLKVVSIADLISDYNTSHYGRYRRKRDKLVDRASAARIPTMWGPFTAYCYRSLLDGIEHIAMVKGEIGDGEDVLVRVHSECLTGDIFGSARCDCGNQLALSMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTVSGRIPILSLITSENKRYLETKRMKMGHIYGIESGNKVDDSSTVTAL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00434 502 Pfam GTP cyclohydrolase II 297 461 IPR032677 -
Vimu2g00434 502 Hamap GTP cyclohydrolase-2 [ribA]. 291 487 IPR000926 GO:0003935|GO:0009231
Vimu2g00434 502 PANTHER GTP CYCLOHYDROLASE II-RELATED 78 486 - -
Vimu2g00434 502 FunFam Riboflavin biosynthesis protein RibBA 293 464 - -
Vimu2g00434 502 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 84 275 IPR000422 GO:0008686|GO:0009231
Vimu2g00434 502 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 80 276 IPR000422 GO:0008686|GO:0009231
Vimu2g00434 502 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 70 292 - -
Vimu2g00434 502 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 78 483 IPR016299 GO:0009231
Vimu2g00434 502 Gene3D DHBP synthase 68 281 - -
Vimu2g00434 502 Gene3D GTP cyclohydrolase II 291 463 IPR036144 -
Vimu2g00434 502 SUPERFAMILY RibA-like 291 462 IPR036144 -
Vimu2g00434 502 NCBIfam GTP cyclohydrolase II 296 484 IPR000926 GO:0003935|GO:0009231
Vimu2g00434 502 SUPERFAMILY YrdC/RibB 78 277 IPR017945 -
Vimu2g00434 502 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 77 281 IPR000422 GO:0008686|GO:0009231
Vimu2g00434 502 CDD GTP_cyclohydro2 292 484 IPR000926 GO:0003935|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00434 Vimu-Chr2 2496924 2499433 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00434 K14652 - gmx:100801046 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03301 11 53326370 53330492 Vimu2g00434 2 2496924 2499433 PCT