Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02952 GTTTGTCGAAACATCCCATTCCTCAAACAAAAACACAACAAACGTCACACTTTCTGTCTCTTTCTATTCCTCCCTTTATTTTTCAAACCCTTTAAAACCACAAATTCTTCCACAAACCCAAAATCCTATATTCCCCTTTTCGTCGTTACTATGTCAGACACCGAAACCACACCGAACCAACCCTCCACTCCACCGCAAACGGAGGCTCCGCCGCAGCCAGACCCCTCCGCACCTCTTTCCTTCACCATATGGCCCCTCACCGGCCGCACCCGCGATGCCATCGTTAACCGCCTCATCGAGACTCTCACCACCTCCTCCGTACTCTCCAAACGCTACGGCACTCTCTTATCCGACGAAGCCTCCGCCGCCGCTCACCAGATCGAGGGGGAAGCATTTTCCGCCGCGGATGCCTCCGCCGCGACCTCCGCCGATGGCATTAAGACCCTCCAGTTCTACTCCAAGGAGATCAGCAAGCGCATGCTCGACACTGTCAAGAGCAGAGCTCCGCCGGGTTCCGCCGCCGTAGAGGGCGTCGCCACTGTCGTCTCCGAATAA 555 0.555 VCRNIPFLKQKHNKRHTFCLFLFLPLFFKPFKTTNSSTNPKSYIPLFVVTMSDTETTPNQPSTPPQTEAPPQPDPSAPLSFTIWPLTGRTRDAIVNRLIETLTTSSVLSKRYGTLLSDEASAAAHQIEGEAFSAADASAATSADGIKTLQFYSKEISKRMLDTVKSRAPPGSAAVEGVATVVSE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02952 184 Gene3D WPP domain 80 173 IPR038214 -
Vimu1g02952 184 MobiDBLite consensus disorder prediction 63 78 - -
Vimu1g02952 184 Pfam WPP domain 80 169 IPR025265 -
Vimu1g02952 184 PANTHER WPP DOMAIN-CONTAINING PROTEIN 1-RELATED 55 174 IPR044692 GO:0000278|GO:0048527
Vimu1g02952 184 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02952 Vimu-Chr1 41857819 41860741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02952 - - vum:124829510 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02952 1 41857819 41860741 Vimu1g02952 1 41857819 41860741 ECH
Vimu1g02952 1 41857819 41860741 Vimu10g03259 10 42874368 42878037 PCT