Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02848 ATGGCTCTCATCACTCGAACCGGAACCACGTGCCGCCTCCCTCAGCGGCTAGCTTCAGCGTCTCTCCTCCACAGCAGTTCCTCCGGAACGGTGGCTCCGACGAGTTATTGTGCGCCGGCTCCGCCGGCGAAGTCCTCCCCCGTGGGATTGTCGAAGCCGGCGGAGTTCGTAATCTCGAAGGTCGACGCGCTCATGAACTGGGCCCGCGTGGGGTCCATCTGGCCCATGACGTTTGGGCTGGCCTGCTGCGCGGTGGAGATGATGCACACGGGTGCGGCCCGTTACGATCTGGACCGCTTCGGAATCATCTTCAGGCCCAGCCCACGGCAGTCCGATTGCATGATCGTTGCTGGCACCCTCACCAACAAGATGGCCCCTGCTCTTCGCAAGGTTTATGATCAAATGCCAGAACCAAGGTGGGTGATATCAATGGGAAGCTGTGCCAATGGAGGAGGATATTACCACTATTCATACTCAGTTGTGAGAGGATGTGACAGGATTGTTCCTGTTGACATATATATCCCAGGTTGTCCTCCAACTGCAGAGGCTTTACTCTATGGTCTCCTCCAGCTCCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCTGGTGGTGGACAAAGTGA 624 0.5689 MALITRTGTTCRLPQRLASASLLHSSSSGTVAPTSYCAPAPPAKSSPVGLSKPAEFVISKVDALMNWARVGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02848 207 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 163 179 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vimu1g02848 207 SUPERFAMILY HydA/Nqo6-like 55 204 - -
Vimu1g02848 207 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 48 196 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vimu1g02848 207 PANTHER NADH DEHYDROGENASE 51 206 - -
Vimu1g02848 207 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 82 191 IPR006137 GO:0051536
Vimu1g02848 207 FunFam NADH-quinone oxidoreductase subunit B 2 49 207 - -
Vimu1g02848 207 NCBIfam NADH-quinone oxidoreductase subunit B 56 197 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vimu1g02848 207 Gene3D - 46 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02848 Vimu-Chr1 40768573 40769419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02848 K03940 - gmx:100814025 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02848 1 40768573 40769419 Vimu1g02848 1 40768573 40769419 ECH
Vimu1g02848 1 40768573 40769419 Vimu10g03163 10 42197666 42200381 PCT