Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03163 ATGGCTCTTCTCAGTCGAGCCTCCTCACGCATATATCAAGTGCACTCCTATCAACGGGCGTTATCCCTCCACACGACGCTCCCAGCTCTCAACGCATCCACATCTACACACACGCCCACACCATATGCTCCGCCACCGCCTCCCTCCGCTTCATCTCCCGTCGGCGTTTCCAAGGCGGCGGAGTTCGTCATCTCCAAGGTCGATGATCTGATGAACTGGGCTCGCCGTGGCTCCATCTGGCCTATGACCTTCGGACTCGCCTGCTGCGCCGTCGAAATGATGCACACCGGCGCCGCCCGCTATGATCTCGATCGCTTCGGCATCATTTTCAGGCCCAGCCCTCGCCAGTCTGACTGTATGATCGTCGCTGGCACTCTCACCAACAAAATGGCTCCCGCTCTTCGCAAGGTTTATGACCAAATGCCTGAACCTAGATGGGTCATTTCAATGGGAAGTTGTGCTAACGGTGGAGGATATTACCACTACTCTTACTCAGTGGTTCGGGGGTGTGACAGGATTGTTCCTGTTGACATATATGTTCCAGGCTGTCCTCCAACTGCTGAGGCTTTGCTGTATGGACTCCTCCAGCTGCAGAAAAAGATCAATAGGCGCAAAGATTTCCTCCATTGGTGGACAAAGTAA 642 0.5436 MALLSRASSRIYQVHSYQRALSLHTTLPALNASTSTHTPTPYAPPPPPSASSPVGVSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03163 213 PANTHER NADH DEHYDROGENASE 57 212 - -
Vimu10g03163 213 FunFam NADH-quinone oxidoreductase subunit B 2 54 213 - -
Vimu10g03163 213 SUPERFAMILY HydA/Nqo6-like 61 205 - -
Vimu10g03163 213 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 88 197 IPR006137 GO:0051536
Vimu10g03163 213 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 169 185 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vimu10g03163 213 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 54 202 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vimu10g03163 213 Gene3D - 59 213 - -
Vimu10g03163 213 NCBIfam NADH-quinone oxidoreductase subunit B 62 203 IPR006138 GO:0008137|GO:0048038|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03163 Vimu-Chr10 42197666 42200381 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03163 K03940 - gmx:100802267 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03163 10 42197666 42200381 Vimu10g03163 10 42197666 42200381 ECH
Vimu1g02848 1 40768573 40769419 Vimu10g03163 10 42197666 42200381 PCT