Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02833 ATGGAACGTGCTCGCAGGCTTGCGAACCGCGCCATTCTGAAGCGTCTGGTTTCAGAGGCAAAGCAGCACCAGAAGAATGAATCCTTACTGCACTCTTCCACCACCCCCATGTTGCTGTACTCTTCCTCTAGGTGCATGTCCTCTGTTTCCTCCGCTGCAGTGAGAAACAGAGGATCCAAAACAGAGACCCTTCTTGGAAGGAGCATGAACATCGCCACCATGTCACGCGGCGTTGTTGGTGGCCTCCTTGGTGTTGGTTCAACCCGATCCATCTCTGTTGAAGCGCTTCAACGGAGTGACACTTTCCCCAGGCGCCATAACTCTGCCACCCCAGAGGAACAGAGCAAGATGGCAGAGTCAATTGGCTTTGAGAGCCTCGATTCTCTGGTGGACGCCACCGTTCCTAAGTCGATCCGCTTGAAGGAGATGAAGTTCAGTAAGTTCGACGGAGGTTTGACAGAGAGCCAGATGATTGAGCACATGAAGGATTTGGCCTCAAAGAACAAGGTTTTCAAGTCCTACATTGGGATGGGGTACTACAACACTCATGTTCCACCAGTGATCTTGAGGAACATAATGGAGAACCCTGCTTGGTACACTCAGTACACTCCTTATCAGGCTGAGATATCTCAGGGGAGGCTTGAGTCACTGCTGAATTACCAGACCCTGATTACTGACCTCACTGGCTTGCCCATGTCCAATGCGTCATTGCTTGATGAGGGCACTGCTGCAGCTGAGGCAATGTCCATGTGCAATAACATCCAAAAGGGGAAGAAGAAGACCTTCATCATCGCAAGCAACTGCCACCCTCAGACCATTGATATTTGCAAGACAAGGGCTGCTGGATTTGATCTCAAGGTTGTGACGGCAGATCTTAAGGATATTGATTACAAATCTGGGGATGTGTGTGGTGTGCTTGTGCAGTACCCTGGGACTGAGGGTGAGGTGTTGGACTATGGGGAGTTCATCAAGAAGGCTCATGCTCATGAGGTGAAGGTTGTTATGGCAAGTGATCTGTTGGCACTGACTGTGTTGAAGCCTCCTGGGGAGTTGGGGGCTGATATTGTTGTTGGATCAGCTCAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCACAAGAGTACAAGAGGATGATGCCAGGGAGAATCATTGGAGTCAGTGTTGATTCTACAGGAAAGACTGCTCTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCCCAGGCACTTCTTGCAAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGCCTTAAGAACATTGCAAACCGTGTTCATGGTCTTGCTGGGGCATTTGCTCTTGGATTAAAGAAACTTGGAACTGTGGAAGTTCAAGACCTTCCCTTCTTTGACACTGTGAAGATTAAGACTTCCAATGCACATGCAATTGCTGATGCAGCTATCAAAAATGAAATAAATTTGCGAGTTGTAGATGGAAACACTATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAAGCTGTTCAAAGTCTTTGCTGGTGGAAAGCCAGTCCCCTTCACAGCTGCATCTATTGCACCAGAAGTGCAAAGTGCAATTCCTTCTGGATTAAGTAGGAATAGCCCTTATCTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAGGCTACAAGCAAAAGATCTCTCACTATGCCACAGTATGATTCCATTGGGATCCTGTACAATGAAGCTGAATGCAACGACAGAAATGATGCCTGTGACATGGCCCAGCTTTAGTGATATTCACCCTTTTGCACCAGTTAACCAGGCTGAAGGTTATCAGGAAATGTTCAACAATTTGGGTGACTTGTTGTGTACCATCACCGGGTTTGACTCCTTCTCCTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCTGGACTTATGGTTATCCGTGCATATCACCTGTCAAGAGGTGACCATCACCGCGATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGCGCTGCAATGTGTGGAATGAAAATCGTCTCAGTTGGAACTGATGCCAAGGGAAACATTAATATAGAAGAGTTGAGGAAGGCTGCTGAAAAACACAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACCCACGGTGTTTATGAGGAAGGTATTGATGAGATCTGCCAGATCATTCATGACAATGGTGGCCAAGTATACATGGATGGTGCCAACATGAATGCACAGGTGGGGCTCACAAGCCCAGGTTGGATAGGAGCAGATGTTTGTCATCTCAATCTCCACAAGACATTCTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCCCACCCTGTGATATCAACTGGTGGAATTCCTGCCCCTGAAAATCCTCAACCACTTGGTACCATCTCTGCTGCACCATGGGGATCAGCACTCATATTGCCTATCTCTTACACTTACATCGCTATGATGGGTTCTAAAGGACTCACTGATGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCCAAACGATTGGAGAACTATTACCCGGTTCTTTTCCGCGGAGTCAATGGAACAGTTGCTCATGAGTTCATTATTGACTTGAGAGGCTTCAAGAATACTGCTGGAATTGAGCCTGAAGATGTTGCAAAACGCCTCATGGACTATGGTTTTCATGCACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAGCCTACAGAGAGTGAAAGCAAGGCCGAGTTGGACAGGTTCTGTGATACTCTTATTTCAATTAGAGAAGAAATTGCTGAAATAGAGAAAGGAAAGGCTGACATAAACAACAATGTGCTTAAGGGAGCTCCTCATCCACCATCATTGCTCATGGCTGATGCATGGACAAAACCATACTCAAGGGAATATGCAGCCTTCCCAGCTCCATGGCTCCGTGCTTCAAAGTTCTGGCCTACCACAGGACGTGTTGATAATGTGTATGGTGACCGCAACCTCATTTGCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAAGAAGCTGCAGCCACAGCCTAG 3189 0.4719 MERARRLANRAILKRLVSEAKQHQKNESLLHSSTTPMLLYSSSRCMSSVSSAAVRNRGSKTETLLGRSMNIATMSRGVVGGLLGVGSTRSISVEALQRSDTFPRRHNSATPEEQSKMAESIGFESLDSLVDATVPKSIRLKEMKFSKFDGGLTESQMIEHMKDLASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTLITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICKTRAAGFDLKVVTADLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHAHEVKVVMASDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSTGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKNIANRVHGLAGAFALGLKKLGTVEVQDLPFFDTVKIKTSNAHAIADAAIKNEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKPVPFTAASIAPEVQSAIPSGLSRNSPYLTHPIFNTYQTEHELLRYLYRLQAKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFSDIHPFAPVNQAEGYQEMFNNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRDVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAEKHKDNLSALMVTYPSTHGVYEEGIDEICQIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVISTGGIPAPENPQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDTLISIREEIAEIEKGKADINNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAPWLRASKFWPTTGRVDNVYGDRNLICTLLPASQAVEEEAAATA 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02833 1062 Coils Coil 721 741 - -
Vimu1g02833 1062 Gene3D Aspartate Aminotransferase, domain 1 174 527 IPR015422 GO:0003824
Vimu1g02833 1062 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 862 1000 - -
Vimu1g02833 1062 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 613 852 - -
Vimu1g02833 1062 Pfam Glycine cleavage system P-protein 105 531 IPR020581 GO:0004375|GO:0006546
Vimu1g02833 1062 Pfam Glycine cleavage system P-protein 549 824 IPR020581 GO:0004375|GO:0006546
Vimu1g02833 1062 NCBIfam aminomethyl-transferring glycine dehydrogenase 105 1046 IPR003437 GO:0004375|GO:0006544
Vimu1g02833 1062 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 96 1053 IPR003437 GO:0004375|GO:0006544
Vimu1g02833 1062 FunFam Glycine cleavage system P protein 438 527 - -
Vimu1g02833 1062 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 88 1052 IPR020581 GO:0004375|GO:0006546
Vimu1g02833 1062 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 185 445 - -
Vimu1g02833 1062 CDD GDC-P 574 969 IPR020581 GO:0004375|GO:0006546
Vimu1g02833 1062 Gene3D Aspartate Aminotransferase, domain 1 861 1000 IPR015422 GO:0003824
Vimu1g02833 1062 CDD GDC-P 154 531 IPR020581 GO:0004375|GO:0006546
Vimu1g02833 1062 SUPERFAMILY PLP-dependent transferases 570 1047 IPR015424 -
Vimu1g02833 1062 Gene3D - 185 445 IPR015421 GO:0003824
Vimu1g02833 1062 Gene3D - 614 840 IPR015421 GO:0003824
Vimu1g02833 1062 SUPERFAMILY PLP-dependent transferases 105 532 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02833 Vimu-Chr1 40633748 40641710 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02833 K00281 - gmx:100777528 1998.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02833 1 40633748 40641710 Vimu10g03155 10 42163832 42169240 PCT