Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03155 ATGGAACGTGCACGGAGGCTAGCAAATAGGGCAATTCTAAAGAGGCTGGTTTCTTCCACGAAGGATCATTCCCATTCACGGCGTCTGTCGTATGTTTCTCATTCTTTTGCAAGAACCAAACAAGAAAACTTGATCGGAAACAACAGACACCATGCAAGCAATGTAACAACATCTCGATCCATTTCAGTGGAGGCACTCAAGCCCAGCGACACGCTCCCTCGACGTCACAACTCTGCCACATCAGATGAGCTGACCAAAATGGCCCAGACATGCGGCTTCGACAATGTCAACTCCCTCATCGACGCCACCATTCCCAAATCCATCCGTCGGAAAGAAATGTCGTTCAACACCTTCGATGAGGGACTGACAGAGTCCGAAATGATGGTGCACATGAGGAGCTTGGAATCAAAGAACAAATGCTTCAAGTCCTACATCGGGATGGGGTACTACAACACGCACGTGCCATCCGTGATCTTGCGGAACATCATGGAGAACCCTGCGTGGTACACTCAGTACACTCCCTACCAGGCTGAGATCTCTCAGGGTCGTCTCGAGTCCCTCATGAATTACCAAACCATGGTCGCAGATCTCACCGCTCTTCCGATGTCCAACTCTTCGTTGCTCGATGAAGGAACTGCGGCTGCTGAAGCAATGTCGATGTGTAACAACATTCACAGGGGGAAGAGGAAGACCTTTGCCATAGCCAATAACTGTCACCCTCAAACTATTGATATTTGCATGACTAGAGCAACTGGTTTCGGGATTAAGGTTGTTGTTGTGGATGTTAACGATGTGGATTACGGATCCGGTGATGTTTGTGGAGTTCTTGTTCAGTATCCGGGGACTGAGGGTGAGGTTTTGGACTATGGGGAGTTTGTTAAGGAGGCTCATTCACATGGAGTTAAGGTTGTTATGGCGTCTGATTTGTTAGCTCTAACTATGTTGAAGCCTCCTGGGGAATTTGGGGTGGACATTGTTGTTGGGTCTACTCAGAGGTTTGGTGTTCCAATGGGTTATGGGGGTCCACATGCTGCGTTCCTGGCCACATCACAAGAGTATAAAAGGTTGGCACCTGGAAGGATCATTGGGCTCAGTGTTGATTCTTGTGGAAAGTCGGCTTTGAGAATGGCCTTGCAAACTAGGGAGCAGCATATCCGCAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGGCATTGCTTGCAAACATGGCTGCTATGTATGCTGTGTATCATGGACCTGAAGGACTTAAAACAATTGCCCAACGAGTTCATGGCCTTGCTGGGGTCTTTGCCCTGGGATTGAAGAAACTTGGTACCGTGGAAGTTCAGGACCATCCCTTCTTTGACACTGTGAAAATTAAGACCACCAATGCTCAAGAAATTGCTGATGTTGCTCACAAAAATGAAATAAATTTGCGGGTTGTTGATGGGAACACAATCACCGTTGCCTTTGATGAAACAACAACCTTGGAGGATGTTGATAACCTTTTCAAAGTTTTTTCTAATGGCAAGCATGTATCCTTCACAGCTACCTCCCTTGCACCAGAAGTTCAGATTGCAATTCCTTCAGGACTAATTAGGAAGACTTTAACATGTATATTTCATTTGCCCTTAAATAGGTACCACACTGAGCATGAAATGCTCAGATACATTCATAGGCTACAATCGAAAGATCTTTCATTGTGCCATAGTATGATCCCATTGGGATCTTGTACAATGAAGTTGAATGCAACCACTGAAATGATGCCTGTGACATGGCCTAACTTTGCTAACATTCACCCTTTTGCACCAATCGAACAGGCTCAAGGTTATCAGGAAATGTTCAAAAATTTGGGTAGCTTGTTGTGTGCAATCACTGGGTTTGACTCTTTCTCCTTGCAACCTAATGCGGGTGCGGCTGGAGAATACGCTGGATTGATGGTTATTCGTGCATATCATTTGGCAAGAGGAGACCACCACCGCAATATTTGCATTATACCAGTGTCTGCACACGGTACGAATCCTGCCAGTGCTGCTATGTGTGGAATGAAAATTGTATCAATCGGAACCGATTCCAAGGGAAACATCAATATTGAAGAGTTGAGAAAGGCTGCTGAAACACACAAGAACAACTTATCTACACTTATGGTAACATATCCTTCAACTCACGGTGTTTACGAAGAAGGCATTGATGAGATATGCAAGATTATTCATGATAACGGAGGACAAGTATATATGGATGGTGCTAACATGAATGCACAGGTGGGACTTACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCATCTGAATCTCCACAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGAGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGTGGTTCCCACTGGTGGCATTCCTTCCCCTGACAAGAGACAACCAGTTGGTACCATTTCTGCAGCACCATGGGGCTCAGCTCTGATATTGCCTATCTCATACTCTTACATAGCCATGATGGGTTCTAAAGGACTCACCGAAGCGTCAAAAACAGCAATTTTGAAGGCAAACTATATGGCAAAACGATTGGAGACTCATTATCCTGTTCTTTACCGTGGAACGAATGGAACTGTTGCTCATGAATTCATCGTTGACTTAAGAGGCTTTAAGAACACTACTGGGATAGAACCTGAGGACGTTGCAAAGCGGCTTATGGACTATGGCTTCCATGGACCCACAATGTCATTTCCTGTGTCTGGCACACTTATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGGCAAGAAATTGCTGAGATTGAGAATGGAAAGGCTGACATGAACAACAATGTACTGAAGGGTGCCCCTCACCCACCATCACTGCTCATGGCAGATGCTTGGACAAAACCTTACTCTCGAGAATATGCAGCCTTCCCAGCTTCCTGGCTTCGATTTTCCAAGTTCTGGCCTTCCACTGGACGTATTGATAATGTGTACGGTGACCGGAACTTGGTTTGCACCCTTCCCCCAGAATCAAAGGTTGCTGAAGAACGAGGTACCACAACAACGTAA 3102 0.4591 MERARRLANRAILKRLVSSTKDHSHSRRLSYVSHSFARTKQENLIGNNRHHASNVTTSRSISVEALKPSDTLPRRHNSATSDELTKMAQTCGFDNVNSLIDATIPKSIRRKEMSFNTFDEGLTESEMMVHMRSLESKNKCFKSYIGMGYYNTHVPSVILRNIMENPAWYTQYTPYQAEISQGRLESLMNYQTMVADLTALPMSNSSLLDEGTAAAEAMSMCNNIHRGKRKTFAIANNCHPQTIDICMTRATGFGIKVVVVDVNDVDYGSGDVCGVLVQYPGTEGEVLDYGEFVKEAHSHGVKVVMASDLLALTMLKPPGEFGVDIVVGSTQRFGVPMGYGGPHAAFLATSQEYKRLAPGRIIGLSVDSCGKSALRMALQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFALGLKKLGTVEVQDHPFFDTVKIKTTNAQEIADVAHKNEINLRVVDGNTITVAFDETTTLEDVDNLFKVFSNGKHVSFTATSLAPEVQIAIPSGLIRKTLTCIFHLPLNRYHTEHEMLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPNFANIHPFAPIEQAQGYQEMFKNLGSLLCAITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNICIIPVSAHGTNPASAAMCGMKIVSIGTDSKGNINIEELRKAAETHKNNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPSPDKRQPVGTISAAPWGSALILPISYSYIAMMGSKGLTEASKTAILKANYMAKRLETHYPVLYRGTNGTVAHEFIVDLRGFKNTTGIEPEDVAKRLMDYGFHGPTMSFPVSGTLMIEPTESESKAELDRFCDALISIRQEIAEIENGKADMNNNVLKGAPHPPSLLMADAWTKPYSREYAAFPASWLRFSKFWPSTGRIDNVYGDRNLVCTLPPESKVAEERGTTTT 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03155 1033 Gene3D Aspartate Aminotransferase, domain 1 144 497 IPR015422 GO:0003824
Vimu10g03155 1033 Coils Coil 692 712 - -
Vimu10g03155 1033 SUPERFAMILY PLP-dependent transferases 538 1020 IPR015424 -
Vimu10g03155 1033 Pfam Glycine cleavage system P-protein 538 795 IPR020581 GO:0004375|GO:0006546
Vimu10g03155 1033 Pfam Glycine cleavage system P-protein 75 501 IPR020581 GO:0004375|GO:0006546
Vimu10g03155 1033 CDD GDC-P 124 501 IPR020581 GO:0004375|GO:0006546
Vimu10g03155 1033 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 66 1024 IPR003437 GO:0004375|GO:0006544
Vimu10g03155 1033 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 833 971 - -
Vimu10g03155 1033 FunFam Glycine cleavage system P protein 408 497 - -
Vimu10g03155 1033 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 57 1024 IPR020581 GO:0004375|GO:0006546
Vimu10g03155 1033 Coils Coil 940 960 - -
Vimu10g03155 1033 CDD GDC-P 545 940 IPR020581 GO:0004375|GO:0006546
Vimu10g03155 1033 Gene3D Aspartate Aminotransferase, domain 1 836 971 IPR015422 GO:0003824
Vimu10g03155 1033 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 155 415 - -
Vimu10g03155 1033 SUPERFAMILY PLP-dependent transferases 75 500 IPR015424 -
Vimu10g03155 1033 NCBIfam aminomethyl-transferring glycine dehydrogenase 75 1017 IPR003437 GO:0004375|GO:0006544
Vimu10g03155 1033 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 584 823 - -
Vimu10g03155 1033 Gene3D - 155 415 IPR015421 GO:0003824
Vimu10g03155 1033 Gene3D - 584 835 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03155 Vimu-Chr10 42163832 42169240 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03155 K00281 - gmx:100795673 1825.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03155 10 42163832 42169240 Vimu10g03155 10 42163832 42169240 ECH
Vimu1g02833 1 40633748 40641710 Vimu10g03155 10 42163832 42169240 PCT