Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02752 ATGAGGGTTTCTCTTGACTTTCAGTTCCCTCTATTGTCCAAGAGTAATCGGTTACAAAAGTTGCTGACAAAGACTAATGAAGAGTGTTCTGATGAAATTCAATTGAATGATTTTCCTGGTGCTTCCAAGGCCTTTGAAATATGTGTAAAGTTCTGCTATGGAATGACTGTTACTCTCAATGCTTACAATGTTGTGGCTGCTCGTTGTGCAGCTGAGTACCTTGAAATGACCGAGGATATTGAGAAAGGGAACTTAGTTTTTAAAATTGAGGTGTTTCTTACCTCCAGTATATTCCGTAGTTGGAAGGATTCTATAATTGTTCTCCAAACTACTAAATCTCTTCTTCCATGGTCTGAGGACCTGAAGATAGTTGGCAGATGCATAGATTCCATAGCCTCTAAAACTTCTGTGGACCCAGCAAACATCACTTGGTCTTATACTTATAACAGGAAGTTATCAGAACTTGATAAAATTGTTGAGGACAAGACAGCACCACGTGAGAAAATTGAGCCTGTTCCCAAGGATTGGTGGGTTGAGGATATATGTGAGCTTGACATTGATCTATATAAACGGGTTATGATTACAATCAAATCCAAGGGAAGAATGGATGGAGTTGTGATTGGTGAAGCACTAAAAATGTATGCTGTCAGATGGTTGCCTGATTCTGTTGATGCATTGGTTTCCGATGCACATGCCCGGAGGAACAAATCTCTAGTAGAAACAATTGTCTGTCTATTGCCATGTGATAATGGCATGGGTTGTTCATGTAGTTTCTTGCTGAAGCTATTGAAAGTGGCCATATTAGTAGAAGCTGATGAGTCTTCAAGGGGACACTTGATGAAGAACATTGGCCTAAAATTGCATGAAGCTTCTGTCAGAGATTTACTGATTCCATCAAGGCTTCCCGTAATCACTAAATTTGATATTGACCTGGTCCAAGATCTTTTGAATCTATACATGACTAACTTAAGGGGAAGCCGTGATATTGAGAGTGAGGAGAAGAAAGACAAAGCAAACGAGTCTATGTTAGGACAGAGGTCTTTATTGAATGTTGGCAAGTTGGTGGATGGCTATCTTGGAGAAATTGCACATGATCAAAATCTCGGCCCTACTAGTTTTGTCGATATCTCACAGTCAATTCCAGATTTTGCCAGACCAAATCATGATGGTCTGTACAGAGCTATAGATATCTACTTGAAGGAGCACCCAGGTTTGACAAAAGCCGAAAGGAAGAAGATATGTGGTCTAATGGATGTTAAGAAGTTGACAGTGGATGCATCAATGCATGCTGCACAGAATGAGCGTCTTCCCCTTAGAGTGGTTGTGCAGGTTCTCTATTTCGAGCAGATAAGAGCCGCCGCCTCCAACGGCCGGACACGTGGCAACAGTCCACGCAACTCCTCGAGCACTCTTGTGAATGGTGATGAGGAGTGTGTGAAAACTGGGGGAGAGAGCTGCCATTCCCTGAACACCCAGATGTGTCAGTTGAAGATGAGAGACGAGGAGTTTAACAAGAATGGGAAGCTGAACAAGAAGAGTAGCAAAAACAGCAGAAGTGGCATGCAGTTGCTGCCATCAAGATCAAGGAGAATCTTTGACAAGTTATGGATTGTTGGAAAAGGGCAAGGAGAGAACAGGAGTTCAGAGACTTCAGGAAGTTCTAACAGTCCAACATCTGTAGTCCCTGGAGACACCAAATCATCTGGTTCATCATTGAGACACAGGAGGCATTCTATCTCTTAA 1743 0.4217 MRVSLDFQFPLLSKSNRLQKLLTKTNEECSDEIQLNDFPGASKAFEICVKFCYGMTVTLNAYNVVAARCAAEYLEMTEDIEKGNLVFKIEVFLTSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLSELDKIVEDKTAPREKIEPVPKDWWVEDICELDIDLYKRVMITIKSKGRMDGVVIGEALKMYAVRWLPDSVDALVSDAHARRNKSLVETIVCLLPCDNGMGCSCSFLLKLLKVAILVEADESSRGHLMKNIGLKLHEASVRDLLIPSRLPVITKFDIDLVQDLLNLYMTNLRGSRDIESEEKKDKANESMLGQRSLLNVGKLVDGYLGEIAHDQNLGPTSFVDISQSIPDFARPNHDGLYRAIDIYLKEHPGLTKAERKKICGLMDVKKLTVDASMHAAQNERLPLRVVVQVLYFEQIRAAASNGRTRGNSPRNSSSTLVNGDEECVKTGGESCHSLNTQMCQLKMRDEEFNKNGKLNKKSSKNSRSGMQLLPSRSRRIFDKLWIVGKGQGENRSSETSGSSNSPTSVVPGDTKSSGSSLRHRRHSIS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02752 580 ProSiteProfiles NPH3 domain profile. 175 451 IPR027356 -
Vimu1g02752 580 MobiDBLite consensus disorder prediction 455 475 - -
Vimu1g02752 580 MobiDBLite consensus disorder prediction 541 580 - -
Vimu1g02752 580 Gene3D Potassium Channel Kv1.1; Chain A 8 86 IPR011333 -
Vimu1g02752 580 PANTHER OS12G0117600 PROTEIN 8 532 IPR043454 -
Vimu1g02752 580 MobiDBLite consensus disorder prediction 543 568 - -
Vimu1g02752 580 Pfam NPH3 family 175 427 IPR027356 -
Vimu1g02752 580 MobiDBLite consensus disorder prediction 455 477 - -
Vimu1g02752 580 SUPERFAMILY POZ domain 9 78 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02752 Vimu-Chr1 39742915 39747643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02752 8 483 EF-hand Containing Proteins AT3G44820 32.283 4.41e-83 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02752 - - gmx:100809437 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02752 1 39742915 39747643 Vimu1g02752 1 39742915 39747643 ECH
Vimu1g02752 1 39742915 39747643 Vimu10g03040 10 41323534 41327660 PCT