Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03040 ATGAAGTTTATGAAGTTGGGTTCCAAGCCTGATGCTCTTCAAGCTGATGGAAACTCTATAAGGTATGTGTCATCTGAATTGGCTACAGATGTTACTGTTACTGTTGGTGATGTTACGTTTCACCTTCACAAGTTCCCTCTACTGTCGAAAAGCAACCAACTGCAAAAATTGGTATCAAAAGCTAATGAAGAGAGCTCTGATGATATTTACTTGGATGATTTTCCTGGAGGACCAAAGGCCTTTGAAATATGTGCAAAATTCTGTTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTAGCTGCTCGTTGTGCAGCTGAGTATCTTGAGATGACTGAAGATATTGATAGAGGAAACTTGGTTTCAAAAATTGAGGTGTTTCTTAACTCAAGTATCTTCCGCTGCTGGAAGGATTCTATAATTGTTCTCCAAACTTCTAAATCTCTTCTGCCATGGTCTGAGGATCTGAAGATCATTGGGAGATGCATAGACTCCATAGCTTCTAAAACTAGTGTGGATCCAGCATACATCACTTGGTCTTACACTTACAATAGGAAATTAGCCGAACCTGATAAAATTGTTGAGGACAAGATGACATTTCTAGAGAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGACATATGTGAGCTGGACATTGATCTTTACAAACGAGTAATGGTTGCTGTGAAATCAAAGGGAAGAATGGACGGTCTTGTTATTGGGGAGGCACTAAAAACCTATGCCTTAAGATGGATACCTGATTCTGTGGATACATTAGTTTCTGGTGCGAATGCCTCAAGGACTAAATCTGTGGTAGAAACAATTGTCTGTCTGTTGCCATATGATAATGGCATTGGTTGTTCGTGTAGTTTCTTACTGAAGCTATTGAGAGTGGCCATACTAGTCTCTGCAAATGAGTCATCAACAAAAGAATTGATGAAGAGCATCAGCCTTAAATTGCATGAAGCTTGTGTCAAAGATTTACTGATTCCAGCAAGGTCTCCCCAGACTACTAAATATGATGTTCATTTGGTACAAGGTCTTTTGAATCAATACATGAATGACAAAAAAGGAAGCTGTGGCATGGAGGTTGTTGAGGAGAAACATGGAGAAGATGAACATATTTTAGCACGAAGGTCTTTATTGAATGTTGGCAAGTTGGTGGATGGTTATCTTGGAGAAATTGCACATGATCCTAATCTTGGCCTCTCTAGTTTTGTTGATTTGTCACAACCCATTCCAGGTTTCGCTAGACCAGATCATGATGGTCTATACAGAGCTATAGATATCTACTTGAAGGAGCACCCGGAATTGACTAAAGCCGAAAGGAAGAAACTATGTGGACTGATGGATGTCAGAAAATTGACTGCAGATGCTTCCATGCATGCTGCGCAGAATGAATACCTTCCCCTTCGAGTTGTAGTCCAAGTTCTCTTCTTTGATCAGGTAAGGTCTTCTATCAGCTTTCAATCACTCGGCCACAATAGCACGTATGACCCTTCAAGCTCTCCAATGAATCGAGATGAGCGGTGTAAGAAAACGATGGAAGATAGCTGCCAACCCCTCAATAACCAGATGAGCCATTTGAGGATCAAGGATGAAGAGTTGCATAAAAATGGGAAATTAGGTAAGAAGAATGGCAAAAACAGCAAAAGTGGCCTTCAGTTGCTGCCGTCAAGATCAAGGAGAATTTTTGACAAGTTATGGAGTGTGAGAAAAGTACTAGGAGAGCATAGGAGCTCAGACACTTCAGGGAGTTCTAGTAGCCCAACTTCTTTAGGCCATGGTGACACCAAATCATGTAGCCTCTCTTTGAGACACCAGAGGCATTCCATCTCTTAG 1851 0.4079 MKFMKLGSKPDALQADGNSIRYVSSELATDVTVTVGDVTFHLHKFPLLSKSNQLQKLVSKANEESSDDIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDIDRGNLVSKIEVFLNSSIFRCWKDSIIVLQTSKSLLPWSEDLKIIGRCIDSIASKTSVDPAYITWSYTYNRKLAEPDKIVEDKMTFLEKIESVPKDWWVEDICELDIDLYKRVMVAVKSKGRMDGLVIGEALKTYALRWIPDSVDTLVSGANASRTKSVVETIVCLLPYDNGIGCSCSFLLKLLRVAILVSANESSTKELMKSISLKLHEACVKDLLIPARSPQTTKYDVHLVQGLLNQYMNDKKGSCGMEVVEEKHGEDEHILARRSLLNVGKLVDGYLGEIAHDPNLGLSSFVDLSQPIPGFARPDHDGLYRAIDIYLKEHPELTKAERKKLCGLMDVRKLTADASMHAAQNEYLPLRVVVQVLFFDQVRSSISFQSLGHNSTYDPSSSPMNRDERCKKTMEDSCQPLNNQMSHLRIKDEELHKNGKLGKKNGKNSKSGLQLLPSRSRRIFDKLWSVRKVLGEHRSSDTSGSSSSPTSLGHGDTKSCSLSLRHQRHSIS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03040 616 Pfam BTB/POZ domain 25 115 IPR000210 GO:0005515
Vimu10g03040 616 CDD BTB_POZ_NPY3-like 21 124 - -
Vimu10g03040 616 SUPERFAMILY POZ domain 22 114 IPR011333 -
Vimu10g03040 616 Gene3D Potassium Channel Kv1.1; Chain A 4 129 IPR011333 -
Vimu10g03040 616 ProSiteProfiles NPH3 domain profile. 211 487 IPR027356 -
Vimu10g03040 616 PANTHER OS12G0117600 PROTEIN 24 571 IPR043454 -
Vimu10g03040 616 MobiDBLite consensus disorder prediction 583 616 - -
Vimu10g03040 616 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Vimu10g03040 616 MobiDBLite consensus disorder prediction 579 616 - -
Vimu10g03040 616 Pfam NPH3 family 211 463 IPR027356 -
Vimu10g03040 616 MobiDBLite consensus disorder prediction 494 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03040 Vimu-Chr10 41323534 41327660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03040 8 486 EF-hand Containing Proteins AT3G44820 33.988 8.49e-92 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03040 - - gmx:100784205 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02752 1 39742915 39747643 Vimu10g03040 10 41323534 41327660 PCT