Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02628 ATGTCTTCCTTTTCCTCCTTCAGAACCCGATCCTCACCGTTCATCGCCCAAAGCTTCTCGCTCCATCGGTTCCAGATCCGCCACTCCTCTACCTCTTCCCCCGCCTCCTCGCTCCTCAACACCGCCGACCCAGTCCGAACCGGTTTCGGTCGAACTGCACTTTCGACCGCCCTGGTCGGCTCTGGTGTCCTAGGTCTTCTTCTGTACGGCTTCTACTCTTTTTCGCCTACTTTAAATTTTGAATCCATCGCTTCTCTAGTTGACCGGTCAACACCGAATTCCGAAGATCAAAAACCACGTCGCACCTTCTTTCCCAAATTTTCGCTTCCTGAAAGTTCTGGCTTGCTACTTGGAGGCAAGAGAAATATTTTCTTCAACTATGAGAAGCGCATGCGGTTGCGAAGTCCTCCGGAAAAGGTTTTTGAGTACTTTGCATCTGATCGCAGTCCAAAAGGAGAAGTACTGATGAAACCAGCAGACCTGATGCGGGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCAACCTTGTTAGAGATGGATACTTGGAAGGAGAAAGGAGTCCGGGTCATTTACGCTGCCCTCCTTCTGAATTTTTTATGCTTTTTGATGTAAACAATGATGGGCTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTTAGCATCCCGGAATCAAGTTTTACAGTGGCATTTAAAATGTTTGATATCAACAATAATGGGGAAATAAGTAAGGAAGAGTTCAAGAAAGTGATGGCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGTGAACCATTCTGTTGAAGATGGAGGGCTGGTGGAATATTTTTTTGATAAAGATGGAAATGGATGCCTCCAGCATGATAAATTTGTTAAATTTTTGAGAGACTTGCATGATGAGATTCTGAGACTGGAGTTTTCTCATTATGACTACAAATCACAACAAACCATATCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCTGCAGACATGAGTCATCTAAGCAGGTTGCTTAAACGGGTTGATATGTTGAATGATAATCCATGCCTCAAGGATGCACGTATCACATTCGAGGATTTCAAAAACTTTGCGGAGCTACGAAAAAAATTGTTGCCATTTTCATTGGCTGTTTTTAGTTTTGGAGAAGTAAACGGTCTGTTGACAAGAGACGATTTTCAGAGGGCAGCATCACAGGTATGCGGCATATCTCTCTCGGACAATGTGGTTGAAATTGTTTTCCATTTGTTTGACACAAATCGGGACGGAAATCTAAGTTTTGGTGAGTTTGTGAGGGTGCTACACAAGCGAGAATGGGACATTGCAAAACCCGTGGAGAAAGGAATCATGGGTTGGTTATCATGCTTCTGGAGTTGTCAACCCCTTAGCACCTGGAAATATTTTGCCATGTATACCCCAGCTTTGTTATCTGCGCTCAGCATTCACTCTGAATGTCTGAGTTATATGGGGAAGCCGGCGGGTAAAAAGAAAGATCATGAGATTCCCGCTCCCACCACGAGGGCGAACGGTCACCACCAGCCGACAAAATCATGGGAGGAGAAACGAGGGGCGGCGGCGGCGGCTGCTTCGTCGTCGTCGGCGTCGTCGAAGGTGCTGGACGAGGACACGGCGATGTTCATAAACATGTCGCATGAGCTTCGAGAGGAAGGGAACCGGTTGTTTCAAAGGAAGGACCACGAGGGAGCGATGTTGAAGTACGAAAAGGCGCTGAAGCTTCTGCCCCGGAACCACATCGACATGGCGCACCTCCACACCAGCATGGCCATCTGCTACATGCAGCTGGGACTGGGCGAGTACCCGCGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTGTCGCCGCGCTACACCAAGGCGCTGCTGAAGCGGGCCAAGTGCTACGAGGCGCTCAACCGCTTGGACCTGGCGATGCGGGACGTGCGCGTGGTTCTGAATTTGGAGCCCAATAACTCCACGGCGCTGGAGGTTTTGGATAGCTTGAGGGGGACGATGGAGGAGAAGGGGATTGTGATTGATGAGACTGAGATAGCCCTCGCGGCGCTTCAGCAGCATCCGGAGCCACCGTCGGCGCGGCTGAGGAAGGTGGTGAGGGAGAAGATCAAGAAGAATAAGAAGGAAAACAAGGGGGAGGATGAGGGGAAGGCGAAGAAGATTATCGTTGAAGAGAAGGTTAAGGATGATAATGTTAGGAAAAAGGACAAAGAGAAATCGGGGAAAGTGGAGAAGGGAAAATTGGGCAAGGAAGATAAAGGGAAATTGGCGAAGGAAGACAAAGGGAAATTGGGGAAAGAAGAGAAACAGAATTTGGGGAAGGAAGAAAAAGAGAAATTGGGGAAAGAAGAAAAAGAGGGTGTTACTAGGACTGTGAAGTTGATATGTGGAGAGGATATTAGATGGGCGCAATTGCCTGTGAATTGTGGAATTAGGTTGGTGAGGGATGTGATAAGGGATAAGTTTCCGGGGTTGAAGGGTGTTCTTGTGAAGTATAAGGACAGGGAGGGTGATTTGGTTACTATAACTAATACTTCTGAATTGAGGCTGGCTGAGACTTGTCATGTTCTTGGGTCGATTCGGCTTTATGTGACCAAGGTTGAGCTGGAAGAGGAGCCATTTTATGATGATGGGGTTGTGGCGGATGGTGAAAAGGTGAAGGTGGTTGAGAATGGGAATGGAGGTGTGGGGAAGGGGAGGAGTAGTACTGTGGAGGATTGGCTTGTGCAGTTTGCTAGGTTGTTTAAGAATCATGTTGGATTTGATTCAGATGCGTATTTGGATATTCATGGGATTGGGATGAAGTTGTATTCGGAGGCCATGGAGGATACAGTGACAAGTGAGGCTGCTCAGGAGCTGTTTGAGATTGCTGCAGATAGGTTTCAGGAGATGGCGGCTTTAGCTTTGTTCAATTGGGGGAGTGTGCATATGTCAAGGGCTAGGAAGAGGGTGAGTCTTACGGAGGATGGATCGAGGGATTCTTCGTTTGAGTGTATTCAAGCTGCTTATGAATGGGCTCAGAAGGAGTATATGAAAGCAGAGAAGAGATTTGGAGAGGCTGTTAGGATCAAACCAGATTTTTATGAAGGGCTTCTTGCTCTAGGGCATCAGCAATTTGAGCAAGCAAGGCTGTGCTGGTGTTATTTGACTGCAACCGAGAAGGATTTAGAAGTCAGCCATGCGGATGAGGTTGTGGAGCTCTTTAACAAGGCTGAAGACAACATGGAGAAAGGCATGATGATGTGGGAGGAGATGGAGGAGCGGCGATTGAATGGACTGTCCAAAACGGATAAGTATAAAGAGCAGCTAGAGAAAATAGGGTTGCATGGTCTTTTCAGGGATGTTTCTGCTGATGAAGCTGATGAACAGGCTGCAAGGATGAGGTTGCAAATATATCTTTTATGGGGCACTTTGTTGTATGAGCGTTCTGTTGTGGAGTATAAGCTAGGCCTGCCAACATGGGAAGAATGTGTAGAGGTTGCAGTTGAAAAATTTGAACTGGCTGGAGCTTCAACAACTGATATTGGGGTCATGATAAAGAATCATTGTTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCTTGGAATGAGATGTATGATGGATGGCAGTTTGATGTTCCATCATTTCGACTTGAACCACTGTTCCGTCGGCGGAGGCAATATTATTGCTTCTATTTTCTTTATTTTGAAGGGCTTCTTCTTTCCATTCTAAGACAGAACACTCATAGGGGGATTGAAGGGCAGCTAAATGCACTAGGCTCCGACACCATGGGTCTAGAGAGGGTATTCTTTCTTCACACTGTTGACTTGTTGATTGGTGCTACGATTGTATTATTCTTTTGCATTGCAGTTTTGTACAAGGTTGAGATGTTTAGGCTAGGAAAAGCCTAG 3960 0.4679 MSSFSSFRTRSSPFIAQSFSLHRFQIRHSSTSSPASSLLNTADPVRTGFGRTALSTALVGSGVLGLLLYGFYSFSPTLNFESIASLVDRSTPNSEDQKPRRTFFPKFSLPESSGLLLGGKRNIFFNYEKRMRLRSPPEKVFEYFASDRSPKGEVLMKPADLMRAVVPVFPPSESNLVRDGYLEGERSPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFTVAFKMFDINNNGEISKEEFKKVMALMRSRHRQGVHHRDGLRTGLKVNHSVEDGGLVEYFFDKDGNGCLQHDKFVKFLRDLHDEILRLEFSHYDYKSQQTISAKDFALSMVASADMSHLSRLLKRVDMLNDNPCLKDARITFEDFKNFAELRKKLLPFSLAVFSFGEVNGLLTRDDFQRAASQVCGISLSDNVVEIVFHLFDTNRDGNLSFGEFVRVLHKREWDIAKPVEKGIMGWLSCFWSCQPLSTWKYFAMYTPALLSALSIHSECLSYMGKPAGKKKDHEIPAPTTRANGHHQPTKSWEEKRGAAAAAASSSSASSKVLDEDTAMFINMSHELREEGNRLFQRKDHEGAMLKYEKALKLLPRNHIDMAHLHTSMAICYMQLGLGEYPRAISECNMALQVSPRYTKALLKRAKCYEALNRLDLAMRDVRVVLNLEPNNSTALEVLDSLRGTMEEKGIVIDETEIALAALQQHPEPPSARLRKVVREKIKKNKKENKGEDEGKAKKIIVEEKVKDDNVRKKDKEKSGKVEKGKLGKEDKGKLAKEDKGKLGKEEKQNLGKEEKEKLGKEEKEGVTRTVKLICGEDIRWAQLPVNCGIRLVRDVIRDKFPGLKGVLVKYKDREGDLVTITNTSELRLAETCHVLGSIRLYVTKVELEEEPFYDDGVVADGEKVKVVENGNGGVGKGRSSTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDTVTSEAAQELFEIAADRFQEMAALALFNWGSVHMSRARKRVSLTEDGSRDSSFECIQAAYEWAQKEYMKAEKRFGEAVRIKPDFYEGLLALGHQQFEQARLCWCYLTATEKDLEVSHADEVVELFNKAEDNMEKGMMMWEEMEERRLNGLSKTDKYKEQLEKIGLHGLFRDVSADEADEQAARMRLQIYLLWGTLLYERSVVEYKLGLPTWEECVEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRRQYYCFYFLYFEGLLLSILRQNTHRGIEGQLNALGSDTMGLERVFFLHTVDLLIGATIVLFFCIAVLYKVEMFRLGKA 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02628 1319 SUPERFAMILY EF-hand 197 308 IPR011992 -
Vimu1g02628 1319 CDD PB1 808 881 - -
Vimu1g02628 1319 SMART efh_1 194 222 IPR002048 GO:0005509
Vimu1g02628 1319 SMART efh_1 422 450 IPR002048 GO:0005509
Vimu1g02628 1319 SMART efh_1 228 256 IPR002048 GO:0005509
Vimu1g02628 1319 ProSiteProfiles EF-hand calcium-binding domain profile. 224 259 IPR002048 GO:0005509
Vimu1g02628 1319 Gene3D - 396 458 - -
Vimu1g02628 1319 CDD EFh 197 254 IPR002048 GO:0005509
Vimu1g02628 1319 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
Vimu1g02628 1319 MobiDBLite consensus disorder prediction 509 539 - -
Vimu1g02628 1319 SMART PB1_new 806 884 IPR000270 GO:0005515
Vimu1g02628 1319 Gene3D Tetratricopeptide repeat domain 560 688 IPR011990 GO:0005515
Vimu1g02628 1319 Pfam EF hand 232 255 IPR002048 GO:0005509
Vimu1g02628 1319 Gene3D - 286 389 - -
Vimu1g02628 1319 Gene3D - 134 280 - -
Vimu1g02628 1319 ProSitePatterns EF-hand calcium-binding domain. 431 443 IPR018247 -
Vimu1g02628 1319 MobiDBLite consensus disorder prediction 749 800 - -
Vimu1g02628 1319 Gene3D - 797 883 - -
Vimu1g02628 1319 SUPERFAMILY CAD & PB1 domains 805 891 - -
Vimu1g02628 1319 PANTHER PROTEIN CLMP1 502 1242 IPR044517 -
Vimu1g02628 1319 Pfam EF-hand domain pair 399 448 IPR002048 GO:0005509
Vimu1g02628 1319 ProSiteProfiles TPR repeat profile. 563 596 IPR019734 GO:0005515
Vimu1g02628 1319 ProSiteProfiles PB1 domain profile. 806 884 IPR000270 GO:0005515
Vimu1g02628 1319 CDD EFh_MICU 229 450 - -
Vimu1g02628 1319 ProSitePatterns EF-hand calcium-binding domain. 237 249 IPR018247 -
Vimu1g02628 1319 SUPERFAMILY TPR-like 558 677 IPR011990 GO:0005515
Vimu1g02628 1319 Pfam EF hand 198 215 IPR002048 GO:0005509
Vimu1g02628 1319 Coils Coil 783 803 - -
Vimu1g02628 1319 ProSiteProfiles TPR repeat profile. 637 670 IPR019734 GO:0005515
Vimu1g02628 1319 SMART tpr_5 563 596 IPR019734 GO:0005515
Vimu1g02628 1319 SMART tpr_5 637 670 IPR019734 GO:0005515
Vimu1g02628 1319 SMART tpr_5 1011 1044 IPR019734 GO:0005515
Vimu1g02628 1319 SMART tpr_5 601 636 IPR019734 GO:0005515
Vimu1g02628 1319 Pfam PB1 domain 806 882 IPR000270 GO:0005515
Vimu1g02628 1319 SUPERFAMILY EF-hand 314 454 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02628 Vimu-Chr1 37992334 38002694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02628 1 412 EF-hand Containing Proteins AT4G32060 61.343 6.62e-160 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02628 K26538 - twl:119992635 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02628 1 37992334 38002694 Vimu10g02988 10 40803798 40809337 PCT