Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02988 ATGATGAAGTTGGAGTTTGCTCATTATAACTATAAATCTCGAAAAACTATATCGGCCAAGGACTTTGCACGCTCCATTGTTTCTTCTGCTGACTTGAGTCATCTAGGCAGGTTGCTTGAACTGGTTGATGACTTGAGCAATGATCCACGGCTTAAGGATGTACGCATAACATTTGAGGACTTCAAAACCTTTTCCGAGCTGCGGAAAAAGTTATTACCATTTTCGTTGGCCATTTTCAGCTTTGCAGACGTTTGCGGTTTGTCTCTCTCGGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGACGCAAATAGGGATGGAAGTTTGAGTACAGAGGAGTTTGTTAGAGTGCTACAACATCGAGAAAGAGACATCGCTCAAACCATGGAGACAGGAATCATGGGATTTTTGTCGTGCTGCTGGAAATGTACGGACACCTCTCCATCTTCACGGTTGTTTTCCTGGTTTTGA 471 0.4268 MMKLEFAHYNYKSRKTISAKDFARSIVSSADLSHLGRLLELVDDLSNDPRLKDVRITFEDFKTFSELRKKLLPFSLAIFSFADVCGLSLSDNVVEIVFHLFDANRDGSLSTEEFVRVLQHRERDIAQTMETGIMGFLSCCWKCTDTSPSSRLFSWF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02988 156 SUPERFAMILY EF-hand 5 126 IPR011992 -
Vimu10g02988 156 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Vimu10g02988 156 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Vimu10g02988 156 Gene3D - 2 134 - -
Vimu10g02988 156 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 2 145 IPR039800 GO:0005509|GO:0006851
Vimu10g02988 156 Pfam EF-hand domain pair 56 121 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02988 Vimu-Chr10 40803798 40809337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02988 1 87 EF-hand Containing Proteins AT4G32060 57.471 2.24e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02988 K22827 - gmx:100786375 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02988 10 40803798 40809337 Vimu10g02988 10 40803798 40809337 ECH
Vimu1g02628 1 37992334 38002694 Vimu10g02988 10 40803798 40809337 PCT