Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02614 ATGTCTCACCACCAAACCACTCTCATGCTGCCCAATCCCACCACCCCTACCCGCTCCTCTTCTGCTTCCTCCTCCCCTCTCCCACTCATCCACGCCATCTTCGGCAGAAAAAACCTCTTCTACCACCGTCTTCCCTCTCTACCCCTCCGACTCTCCGTCCTCAAGCTCGATGGCTCCTCCTTCCGTACGCAACCCCCCTTCCCTTCCTTTTATTTATCATCGTCATCTCTTCACACACTGCTCAAACTTTCTTCGCTTTTTGCAGATATTCAGGTTTCCAAGACCGCCACTATTGCCGAACTTAAAGACGCAGTCGAGGCTGTCTTCGCCCACACGCCTCTCAAGGGTCCCGCCAAAATTTCATGGGCGCATGTTTGGGGGCAGTTTTGCTTATGCTATGATGGACAGAAGCTAGTTACCGAGAATGATTATCTTCGAAACTATGGCATCAAGGATGGTGACGAGATAATCCGTCATTTATATGGGCCTGTAATTGTTTCTTGCATTGATGTTAAGAGAAAATTAACATTTTCCGGGGAAAGAGTTACAGATGGAAGTTCATTGTACAGTCTTCGTTTCATCCGCCATGTTTCAAACAATTGCTGTGTCCAAAGAAAGCGGTTGAAGAAAAGAATTGTCTATTTGAAACCGCAGAGGAGGTCTTCTCCAGTGGATAGCTATCAAGACAAAAGAAAGAGTGATAGTGATGAGATTGGTTCTGACGATGAAGCCACGGATAATGAGAAGCATGACACTGAAGAAGTAGAAGAAGAGCGTGTTGTAAAGAACAAATTTGCTGGCTTTGTGGGAGAGTTGTTCTCTTACACTCCACTGGCAGTTGAGAAGGCCCTATTCTCGGAGACTTACATGGAGACATATGGGTTAATATTTGGAAGAAATGTGTCCAGAATACCAATGACACTAGCCAAGCCAGATGAAAACTGA 945 0.4603 MSHHQTTLMLPNPTTPTRSSSASSSPLPLIHAIFGRKNLFYHRLPSLPLRLSVLKLDGSSFRTQPPFPSFYLSSSSLHTLLKLSSLFADIQVSKTATIAELKDAVEAVFAHTPLKGPAKISWAHVWGQFCLCYDGQKLVTENDYLRNYGIKDGDEIIRHLYGPVIVSCIDVKRKLTFSGERVTDGSSLYSLRFIRHVSNNCCVQRKRLKKRIVYLKPQRRSSPVDSYQDKRKSDSDEIGSDDEATDNEKHDTEEVEEERVVKNKFAGFVGELFSYTPLAVEKALFSETYMETYGLIFGRNVSRIPMTLAKPDEN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02614 314 Gene3D - 74 163 - -
Vimu1g02614 314 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 18 282 IPR039690 GO:0000398|GO:0005689
Vimu1g02614 314 SUPERFAMILY Ubiquitin-like 88 158 IPR029071 -
Vimu1g02614 314 MobiDBLite consensus disorder prediction 223 256 - -
Vimu1g02614 314 CDD Ubl_SNRNP25 49 159 IPR040610 -
Vimu1g02614 314 Pfam Ubiquitin-like domain 81 156 IPR040610 -
Vimu1g02614 314 MobiDBLite consensus disorder prediction 219 256 - -
Vimu1g02614 314 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02614 Vimu-Chr1 37757130 37759800 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02614 - - gmx:100820296 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02614 1 37757130 37759800 Vimu1g02614 1 37757130 37759800 ECH
Vimu10g02970 10 40659126 40662518 Vimu1g02614 1 37757130 37759800 ECH
Vimu1g02614 1 37757130 37759800 Vimu10g02970 10 40659126 40662518 PCT