Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02970 ATGTATGACAATCCAGCCATCGTGATGCATGTGGGTGACAGAAGCTTCATGATTCTTTCCAACGGAAGCTATCGGCGATCGTCAAGCATGAGCATCAAAGACGACACATTTTACTACGACAAGCCTCCTTCCCAAACGCTCAACCTCTCCATAATCAAATTGGACGCCTCTTACTTCCGCATTGAAGTCTCAAATGAAGCAACTGTTGCAGAACTCAAGCAGGCTGTGGAGGACATTTTCGCTCACGTGCCTCTGAAGGGCGCGGGGAAAATATTGTGGCCACTTGTTTGGCGGCAATTCTGCTTATCCTACCAAGGACACAAATTAGTTACAGAGACGGATTACCTTCGAGATTATGGCATCAAGGATGGTGACCAGCTGCATTTCGTGCGTCATATATCTGACACTGACAGTTACAATAAGCAGTCAAAGAAACGAGATTTCAATTTGAAAAATAAACGCACGAGGTCATCTCATCAACTGAATATATATCAACGGACAGAACATAACGATGACGAAGACGACATTGGTTTGAATGGTATAGTCATAGAGAATGGGAATATCCAGAATTACAATGGAGAAGAAATTCGAGGAGGAAAGAGCTGGCTATCTGGTTTTTTGGGAGGACTATTCTCACACAGCCGTCTGCCAGTTGTGCGAAGACATGGAACTGAGGAACGATGTGCCTTGGGAGTTGTAGTAGAGCTCATAATGCTAAAGTCTATCAGGCACGGCATAGCTTTAGGTTACTTAGTTGCTGCAGTTAGTGTCAAGGCCTACCTGCAATGGAAAGTAGCCATGGCAAACATGATTATGGCTTCCACCAAACCTTTGGTTCCAGTCTACACCAATTCTCGTTCTCCCACGCCCAAACTTCCCATTCTCCAAATTTCACTCCCCAAAGTCCCAACCCTTAAACTGAAACTCCCAATACCAAAGCCCCAGATGCTATCCCTCCTGGGCGGAATAGCACCACTGATTTTGGCTCAGCCCTCCCTCGCAAGCGAAATAGAGAAAGCTGCACTGTTCGACTTCAACCTGACCCTGCCCATTATAATGGTAGAGTTTCTGTTTCTGATGGTTGCGCTGGACAAAATATGGTTCACCCCACTTGGGAAATTCATGGACGAGAGGGACGCGGCGATCAGGGAGAAGCTAAACAGCGTGAAGGACACGTCGGAGGAGGTTAAGCAGCTGGAGGAGAAGGCGAATGCCGTGATGGCGGCTGCTCGGGCGGAGATTGCGGCGGCACTGAACGCGATGAAGAAGGAGACGCAGGCGGAGGTGGAGCAAAAGATTGCGGAGGGAAGGAAGAAAGTGGATGCTGAGCTGCAAGAGGCTCTGGCTAACTTGGAGAGGCAAAAGGAAGAAACCATCAAGTCCCTTGATTCCCAGATTGCAGATCTTAGCCAGGAGATTGTTAAAAAGGTTCTTCCCGTTGCTTAA 1446 0.4772 MYDNPAIVMHVGDRSFMILSNGSYRRSSSMSIKDDTFYYDKPPSQTLNLSIIKLDASYFRIEVSNEATVAELKQAVEDIFAHVPLKGAGKILWPLVWRQFCLSYQGHKLVTETDYLRDYGIKDGDQLHFVRHISDTDSYNKQSKKRDFNLKNKRTRSSHQLNIYQRTEHNDDEDDIGLNGIVIENGNIQNYNGEEIRGGKSWLSGFLGGLFSHSRLPVVRRHGTEERCALGVVVELIMLKSIRHGIALGYLVAAVSVKAYLQWKVAMANMIMASTKPLVPVYTNSRSPTPKLPILQISLPKVPTLKLKLPIPKPQMLSLLGGIAPLILAQPSLASEIEKAALFDFNLTLPIIMVEFLFLMVALDKIWFTPLGKFMDERDAAIREKLNSVKDTSEEVKQLEEKANAVMAAARAEIAAALNAMKKETQAEVEQKIAEGRKKVDAELQEALANLERQKEETIKSLDSQIADLSQEIVKKVLPVA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02970 481 Pfam ATP synthase B/B' CF(0) 349 478 IPR002146 GO:0015078|GO:0015986|GO:0045263
Vimu10g02970 481 Gene3D - 42 142 - -
Vimu10g02970 481 CDD ATP-synt_Fo_b 348 478 - -
Vimu10g02970 481 Hamap ATP synthase subunit b [atpF]. 343 480 IPR002146 GO:0015078|GO:0015986|GO:0045263
Vimu10g02970 481 Coils Coil 437 472 - -
Vimu10g02970 481 CDD Ubl_SNRNP25 49 132 IPR040610 -
Vimu10g02970 481 SUPERFAMILY Ubiquitin-like 42 134 IPR029071 -
Vimu10g02970 481 Pfam Ubiquitin-like domain 48 133 IPR040610 -
Vimu10g02970 481 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 32 423 IPR039690 GO:0000398|GO:0005689
Vimu10g02970 481 Hamap ATP synthase subunit b' [atpF2]. 342 479 IPR034679 GO:0015078|GO:0015986|GO:0045263
Vimu10g02970 481 Coils Coil 382 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02970 Vimu-Chr10 40659126 40662518 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02970 K02109 - pvu:PHAVU_009G092400g 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02970 10 40659126 40662518 Vimu10g02970 10 40659126 40662518 ECH
Vimu10g02970 10 40659126 40662518 Vimu1g02614 1 37757130 37759800 ECH
Vimu1g02614 1 37757130 37759800 Vimu10g02970 10 40659126 40662518 PCT